2011

Articles indexed in ISI

1. Abrantes, M., Lopes, M. d. F., and Kok, J. (2011) Impact of manganese,copper and zinc ions on the transcriptome of the nosocomial pathogen Enterococcus faecalis V583, PLoS ONE 6(10): e26519 http://dx.doi.org/10.1371/journal.pone.0026519
2. Adamova, G., Gardas, R. L., Rebelo, L. P. N., Robertson, A. J., and Seddon, K. R. (2011) Alkyltrioctylphosphonium chloride ionic liquids: synthesis and physicochemical properties, Dalton Transactions 40(47): 12750-12764 http://dx.doi.org/10.1007/s00122-011-1634-4
3. Adler, S., Basketter, D., Creton, S., Pelkonen, O., van Benthem, J., Zuang, V., Andersen, K. E., Angers-Loustau, A., Aptula, A., Bal-Price, A., Benfenati, E., Bernauer, U., Bessems, J., Bois, F. Y., Boobis, A., Brandon, E., Bremer, S., Broschard, T., Casati, S., Coecke, S., Corvi, R., Cronin, M., Daston, G., Dekant, W., Felter, S., Grignard, E., Gundert-Remy, U., Heinonen, T., Kimber, I., Kleinjans, J., Komulainen, H., Kreiling, R., Kreysa, J., Leite, S. B., Loizou, G., Maxwell, G., Mazzatorta, P., Munn, S., Pfuhler, S., Phrakonkham, P., Piersma, A., Poth, A., Prieto, P., Repetto, G., Rogiers, V., Schoeters, G., Schwarz, M., Serafimova, R., Tahti, H., Testai, E., van Delft, J., van Loveren, H., Vinken, M., Worth, A., and Zaldivar, J. M. (2011) Alternative (non-animal) methods for cosmetics testing: current status and future prospects-2010, Archives of Toxicology 85(5): 367-485 http://dx.doi.org/10.1007/s00204-011-0693-2
4. Ahmadi, N., Negrao, S., Katsantonis, D., Frouin, J., Ploux, J.,Letourmy, P., Droc, G., Babo, P., Trindade, H., Bruschi, G., Greco, R.,Oliveira, M. M., Piffanelli, P., and Courtois, B. (2011) Targeted association analysis identified japonica rice varieties achieving Na(+)/K(+) homeostasis without the allelic make-up of the salt tolerant indica variety Nona Bokra, Theoretical and Applied Genetics 123(6): 881-895 http://dx.doi.org/10.1007/s00122-011-1634-4
5. Alexov, E., Mehler, E. L., Baker, N., Baptista, A. M., Huang, Y., Milletti, F., Nielsen, J. E., Farrell, D., Carstensen, T., Olsson, M. H. M., Shen, J. K., Warwicker, J., Williams, S., and Word, J. M. (2011) Progress in the prediction of pK(a) values in proteins, Proteins-Structure Function and Bioinformatics 79(12): 3260-3275 http://dx.doi.org/10.1002/prot.23189
6. Almeida, J. F., Ferreira, P., Lopes, A., and Gil, M. H. (2011) Photocrosslinkable biodegradable responsive hydrogels as drug delivery systems, International Journal of Biological Macromolecules 49(5): 948-954 http://dx.doi.org/10.1016/j.ijbiomac.2011.08.010
7. Alves, A. S., Paquete, C. M., Fonseca, B. M., and Louro, R. O. (2011) Exploration of the 'cytochromome' of Desulfuromonas acetoxidans, a marine bacterium capable of powering microbial fuel cells, Metallomics 3(4): 349-353 http://dx.doi.org/10.1039/c0mt00084a
8. Alves, M., Chicau, P., Matias, H., Passarinho, J., Pinheiro, C., and Ricardo, C. P. (2011) Metabolic analysis revealed altered amino acid profiles in Lupinus albus organs as a result of boron deficiency, Physiologia Plantarum 142(3): 224-232 http://dx.doi.org/10.1111/j.1399-3054.2011.01462.x
9. Alves, M., Moes, S., Jeno, P., Pinheiro, C., Passarinho, J., and Ricardo, C. P. (2011) The analysis of Lupinus albus root proteome revealed cytoskeleton altered features due to long-term boron deficiency, Journal of Proteomics 74(8): 1351-1363 http://dx.doi.org/10.1016/j.jprot.2011.03.002
10. Amaral, A. I., Teixeira, A. P., Sonnewald, U., and Alves, P. M. (2011) Estimation of intracellular fluxes in cerebellar neurons after hypoglycemia: importance of the pyruvate recycling pathway and glutamine oxidation, Journal of Neuroscience Research 89(5): 700-710 http://dx.doi.org/10.1002/jnr.22571
11. Amaro, H. M., Guedes, A. C., and Malcata, F. X. (2011) Advances and perspectives in using microalgae to produce biodiesel, Applied Energy 88(10): 3402-3410 http://dx.doi.org/10.1016/j.apenergy.2010.12.014
12. Araujo, J. M. M., Ferreira, R., Marrucho, I. M., and Rebelo, L. P. N. (2011) Solvation of nucleobases in 1,3-dialkylimidazolium acetate ionic liquids: NMR spectroscopy insights into the dissolution mechanism, Journal of Physical Chemistry B 115(35): 10739-10749 http://dx.doi.org/10.1021/jp203282k
13. Argemi, A., Domingo, C., de Sousa, A. R. S., Duarte, C. M. M., Garcia-Gonzalez, C. A., and Saurina, J. (2011) Characterization of new topical ketoprofen formulations prepared by drug entrapment in solid lipid matrices, Journal of Pharmaceutical Sciences 100(11): 4783-4789 http://dx.doi.org/10.1002/jps.22684
14. Ascenso, O. S., Marques, J. C., Santos, A. R., Xavier, K. B., Ventura, M. R., and Maycock, C. D. (2011) An efficient synthesis of the precursor of AI-2, the signalling molecule for inter-species quorum sensing, Bioorganic & Medicinal Chemistry 19(3): 1236-1241 http://dx.doi.org/10.1016/j.bmc.2010.12.036
15. Astier, Y., Datas, L., Carney, R., Stellacci, F., Gentile, F., and DiFabrizio, E. (2011) Artificial surface-modified Si3N4 nanopores for single surface-modified gold nanoparticle scanning, Small 7(4): 455-459 http://dx.doi.org/10.1002/smll.201002113
16. Atilano, M. L., Yates, J., Glittenberg, M., Filipe, S. R., and Ligoxygakis, P. (2011) Wall teichoic acids of Staphylococcus aureus limit recognition by the drosophila peptidoglycan recognition protein-SA to promote pathogenicity, Plos Pathogens 7(12): 2421-2421 http://dx.doi.org/10.1371/journal.ppat.1002421
17. Bali, S., Lawrence, A. D., Lobo, S. A., Saraiva, L. M., Golding, B. T., Palmer, D. J., Howard, M. J., Ferguson, S. J., and Warren, M. J. (2011) Molecular hijacking of siroheme for the synthesis of heme and d(1) heme, Proceedings of the National Academy of Sciences of the United States of America 108(45): 18260-18265 http://dx.doi.org/10.1073/pnas.1108228108
18. Baltazar, C. S. A., Marques, M. C., Soares, C. M., DeLacey, A. M., Pereira, I. A. C., and Matias, P. M. (2011) Nickel-iron-selenium hydrogenases - an overview, European Journal of Inorganic Chemistry , 2011(7)948-962 http://dx.doi.org/10.1002/ejic.201001127
19. Barreto, M. C., Boas, L. V., Carneiro, L. C., and Romao, M. V. S. (2011) Volatile compounds in samples of cork and also produced by selected fungi, Journal of Agricultural and Food Chemistry 59(12): 6568-6574 http://dx.doi.org/10.1021/jf200560e
20. Barreto, M. C., Frisvad, J. C., Larsen, T. O., Mogensen, J., and Romao, M. V. S. (2011) Exo-metabolome of some fungal isolates growing on cork-based medium, European Food Research and Technology 232(4): 575-582 http://dx.doi.org/10.1007/s00217-011-1426-8
21. Barreto, M. C., Houbraken, J., Samson, R. A., Frisvad, J. C., and Romao, M. V. S. (2011) Taxonomic studies of the Penicillium glabrum complex and the description of a new species P. subericola, Fungal Diversity 49(5): 23-33 http://dx.doi.org/10.1007/s13225-011-0090-4
22. Batista, A. P., Marreiros, B. C., and Pereira, M. M. (2011) Decoupling of the catalytic and transport activities of complex I from Rhodothermus marinus by sodium/proton antiporter inhibitor, ACS Chemical Biology 6(5): 477-483 http://dx.doi.org/10.1021/cb100380y
23. Batista, A. P., and Pereira, M. M. (2011) Sodium influence on energy transduction by complexes I from Escherichia coli and Paracoccus denitrificans, Biochimica Et Biophysica Acta-Bioenergetics 1807(3): 286-292 http://dx.doi.org/10.1016/j.bbabio.2010.12.008
24. Batista-Nascimento, L., Neef, D. W., Liu, P. C. C., Rodrigues-Pousada, C., and Thiele, D. J. (2011) Deciphering human heat shock transcription factor 1 regulation via post-translational modification in yeast, PLoS ONE 6(1): e15976 http://dx.doi.org/10.1371/journal.pone.0015976
25. Bernardes, C. E. S., da Piedade, M. E. M., and Lopes, J. N. C. (2011) The structure of aqueous solutions of a hydrophilic ionic liquid: the full concentration range of 1-ethyl-3-methylinnidazolium ethylsulfate and water, Journal of Physical Chemistry B 115(9): 2067-2074 http://dx.doi.org/10.1021/jp1113202
26. Bernier, N., Costa, J., Delgado, R., Felix, V., Royal, G., and Tripier, R. (2011) trans-Methylpyridine cyclen versus cross-bridged trans-methylpyridine cyclen. Synthesis, acid-base and metal complexation studies (metal = Co2+, Cu2+, and Zn2+), Dalton Transactions 40(17): 4514-4526 http://dx.doi.org/10.1039/c0dt01191f
27. de Bettencourt, A. M., Duarte, M. F., Florencio, M. H., Henriques, F. F., Madeira, P. A., Maria, I. P. A., and Vilas-Boas, L. F. (2011) Possible key intermediates in arsenic biochemistry: synthesis and identification by liquid chromatography electrospray ionization mass spectrometry and high resolution mass spectrometry, Microchemical Journal 99(2): 218-234 http://dx.doi.org/10.1016/j.microc.2011.05.007
28. Botelho, H. M., and Gomes, C. M. (2011) Structural reorganization renders enhanced metalloprotein stability, Chemical Communications 47(39): 11149-11151 http://dx.doi.org/10.1039/c1cc13354c
29. Bouchami, O., Achour, W., Mekni, M. A., Rolo, J., and Ben Hassen, A. (2011) Antibiotic resistance and molecular characterization of clinical isolates of methicillin-resistant coagulase-negative staphylococci isolated from bacteremic patients in oncohematology, Folia Microbiologica 56(2): 122-130 http://dx.doi.org/10.1007/s12223-011-0017-1
30. Bouchami, O., Ben Hassen, A., de Lencastre, H., and Miragaia, M. (2011) Molecular epidemiology of methicillin-resistant Staphylococcus hominis (MRSHo): low clonality and reservoirs of SCCmec structural elements, PLoS ONE 6(7): e21940 http://dx.doi.org/10.1371/journal.pone.0021940
31. Braga, T. M., Marujo, P. E., Pomba, C., and Lopes, M. F. S. (2011) Involvement, and dissemination, of the enterococcal small multidrug resistance transporter QacZ in resistance to quaternary ammonium compounds, Journal of Antimicrobial Chemotherapy 66(2): 283-286 http://dx.doi.org/10.1093/jac/dkq460
32. Brito, J. A., Borges, N., Vonrhein, C., Santos, H., and Archer, M. (2011) Crystal structure of archaeoglobus fulgidus CTP:inositol-1-phosphate cytidylyltransferase, a key enzyme for di-myo-inositol-phosphate synthesis in (hyper) thermophiles, Journal of Bacteriology 193(9): 2177-2185 http://dx.doi.org/10.1128/jb.01543-10
33. Brito, J. A., Ladeira, S., Teuma, E., Royo, B., and Gomez, M. (2011) Dioxomolybdenum(VI) complexes containing chiral oxazolines applied in alkenes epoxidation in ionic liquids: a highly diastereoselective catalyst, Applied Catalysis A-General 398(1-2): 88-95 http://dx.doi.org/10.1016/j.apcata.2011.03.024
34. Brito, J. A., Royo, B., and Gomez, M. (2011) An overview of chiral molybdenum complexes applied in enantioselective catalysis, Catalysis Science & Technology 1(2): 1109-1118 http://dx.doi.org/10.1039/c1cy00123j
35. Caldeira, A. T., Arteiro, J. M. S., Coelho, A. V., and Roseiro, J. C. (2011) Combined use of LC-ESI-MS and antifungal tests for rapid identification of bioactive lipopeptides produced by Bacillus amyloliquefaciens CCMI 1051, Process Biochemistry 46(9): 1738-1746 http://dx.doi.org/10.1016/j.procbio.2011.05.016
36. Campelo, A. B., Gaspar, P., Roces, C., Rodriguez, A., Kok, J., Kuipers, O. P., Neves, A. R., and Martinez, B. (2011) The Lcn972 bacteriocin-encoding plasmid pBL1 impairs cellobiose metabolism in Lactococcus lactis, Applied and Environmental Microbiology 77(21): 7576-7585 http://dx.doi.org/10.1128/aem.06107-11
37. Campos, E., Cordeiro, R., Santos, A. C., Matos, C., and Gil, M. H. (2011) Design and characterization of bi-soft segmented polyurethane microparticles for biomedical application, Colloids and Surfaces B-Biointerfaces 88(1): 477-482 http://dx.doi.org/10.1016/j.colsurfb.2011.07.037
38. Campos, E., Moura, T. F., Oliva, A., Leandro, P., and Soveral, G. (2011) Lack of Aquaporin 3 in bovine erythrocyte membranes correlates with low glycerol permeation, Biochemical and Biophysical Research Communications 408(3): 477-481 http://dx.doi.org/10.1016/j.bbrc.2011.04.057
39. Capitao, C., Paiva, J. A. P., Santos, D. M., and Fevereiro, P. (2011) In Medicago truncatula, water deficit modulates the transcript accumulation of components of small RNA pathways, BMC Plant Biology 11, ART79 http://dx.doi.org/10.1186/1471-2229-11-79
40. Carilho, R., de Carvalho, M., Kuehl, U., Pinto, S., Pinto, A., Kromminga, A., and Costa, J. (2011) Erythropoietin and amyotrophic lateral sclerosis: plasma level determination, Amyotrophic Lateral Sclerosis 12(6): 439-443 http://dx.doi.org/10.3109/17482968.2011.584881
41. Carinhas, N., Bernal, V., Teixeira, A. P., Carrondo, M. J. T., Alves, P. M., and Oliveira, R. (2011) Hybrid metabolic flux analysis: combining stoichiometric and statistical constraints to model the formation of complex recombinant products, BMC Systems Biology 5, ART34 http://dx.doi.org/10.1186/1752-0509-5-34
42. Carinhas, N., Robitaille, A. M., Moes, S., Carrondo, M. J. T., Jenoe, P., Oliveira, R., and Alves, P. M. (2011) Quantitative proteomics of Spodoptera frugiperda cells during growth and baculovirus infection, PLoS ONE 6(10): e26444 http://dx.doi.org/10.1371/journal.pone.0026444
43. Carrondo, M., Panet, A., Wirth, D., Coroadinha, A. S., Cruz, P., Falk, H., Schucht, R., Dupont, F., Geny-Fiamma, C., Merten, O. W., and Hauser, H. (2011) Integrated strategy for the production of therapeutic retroviral vectors, Human Gene Therapy 22(3): 370-379 http://dx.doi.org/10.1089/hum.2009.165
44. Carvalhal, A. V., Santos, S. S., and Carrondo, M. J. T. (2011) Extracellular purine and pyrimidine catabolism in cell culture, Biotechnology Progress 27(5): 1373-1382 http://dx.doi.org/10.1002/btpr.656
45. Carvalho, A. L., Cardoso, F. S., Bohn, A., Neves, A. R., and Santos, H. (2011) Engineering trehalose synthesis in Lactococcus lactis for improved stress tolerance, Applied and Environmental Microbiology 77(12): 4189-4199 http://dx.doi.org/10.1128/aem.02922-10
46. Carvalho, A. P., Silva, S. O., Baptista, J. M., and Malcata, F. X. (2011) Light requirements in microalgal photobioreactors: an overview of biophotonic aspects, Applied Microbiology and Biotechnology 89(5): 1275-1288 http://dx.doi.org/10.1007/s00253-010-3047-8
47. Carvalho, G., Almeida, B., Fradinho, J., Oehmen, A., Reis, M. A. M., and Crespo, M. T. B. (2011) Microbial characterization of mercury-reducing mixed cultures enriched with different carbon sources, Microbes and Environments 26(4): 293-300 http://dx.doi.org/10.1264/jsme2.ME11112
48. Carvalho, M. B., Tavares, S., Medeiros, J., Nunez, O., Gallart-Ayala, H., Leitao, M. C., Galceran, M. T., Hursthouse, A., and Pereira, C. S. (2011) Degradation pathway of pentachlorophenol by Mucor plumbeus involves phase II conjugation and oxidation-reduction reactions, Journal of Hazardous Materials 198, 133-142 http://dx.doi.org/10.1016/j.jhazmat.2011.10.021
49. Carvalho, S. M., Kloosterman, T. G., Kuipers, O. P., and Neves, A. R. (2011) CcpA ensures optimal metabolic fitness of Streptococcus pneumoniae, PLoS ONE 6(10): e26707 http://dx.doi.org/10.1371/journal.pone.0026707
50. Chaves, I., Alves, M., Carrilho, D., Duque-Magalhaes, M. C., Ricardo, C. P., and Regalado, A. P. (2011) Protein changes during programmed cell death in tobacco, Biologia Plantarum 55(1): 153-158 http://dx.doi.org/10.1007/s10535-011-0021-y
51. Chaves, I., Passarinho, J. A. P., Capitao, C., Chaves, M. M., Fevereiro, P., and Ricardo, C. P. P. (2011) Temperature stress effects in Quercus suber leaf metabolism, Journal of Plant Physiology 168(15): 1729-1734 http://dx.doi.org/10.1016/j.jplph.2011.05.013
52. Cmoch, A., Strzelecka-Kiliszek, A., Palczewska, M., Groves, P., and Pikula, S. (2011) Matrix vesicles isolated from mineralization-competent Saos-2 cells are selectively enriched with annexins and S100 proteins, Biochemical and Biophysical Research Communications 412(4): 683-687 http://dx.doi.org/10.1016/j.bbrc.2011.08.025
53. Conceicao, T., Aires-de-Sousa, M., Pona, N., Brito, M. J., Barradas, C., Coelho, R., Sardinha, T., Sancho, L., de Sousa, G., Machado, M. D., and de Lencastre, H. (2011) High prevalence of ST121 in community-associated methicillin-susceptible Staphylococcus aureus lineages responsible for skin and soft tissue infections in Portuguese children, European Journal of Clinical Microbiology & Infectious Diseases 30(2): 293-297 http://dx.doi.org/10.1007/s10096-010-1087-8
54. Conde, A., Chaves, M. M., and Geros, H. (2011) Membrane transport, sensing and signaling in plant adaptation to environmental stress, Plant and Cell Physiology 52(9): 1583-1602 http://dx.doi.org/10.1093/pcp/pcr107
55. Correia, B., Chen, Z. J., Mendes, S., Martins, L. O., and Bento, I. (2011) Crystallization and preliminary X-ray diffraction analysis of the azoreductase PpAzoR from Pseudomonas putida MET94, Acta Crystallographica Section F-Structural Biology and Crystallization Communications 67, 121-123 http://dx.doi.org/10.1107/s1744309110048220
56. Correia, B. E., Ban, Y. E. A., Friend, D. J., Ellingson, K., Xu, H. Y., Boni, E., Bradley-Hewitt, T., Bruhn-Johannsen, J. F., Stamatatos, L., Strong, R. K., and Schiefl, W. R. (2011) Computational protein design using flexible backbone remodeling and resurfacing: case studies in structure-based antigen design, Journal of Molecular Biology 405(1): 284-297 http://dx.doi.org/10.1016/j.jmb.2010.09.061
57. Correia, V. G., Bonifacio, V. D. B., Raje, V. P., Casimiro, T., Moutinho, G., da Silva, C. L., Pinho, M. G., and Aguiar-Ricardo, A. (2011) Oxazoline-based antimicrobial oligomers: synthesis by CROP using supercritical CO(2), Macromolecular Bioscience 11(8): 1128-1137 http://dx.doi.org/10.1002/mabi.201100126
58. Costa, A. J. L., Esperanca, J. M. S. S., Marrucho, I. M., and Rebelo, L. P. N. (2011) Densities and vscosities of 1-ehyl-3-methylimidazolium n-akyl sulfates, Journal of Chemical and Engineering Data 56(8): 3433-3441 http://dx.doi.org/10.1021/je200434a
59. da Costa, A. P., Lopes, R., Cardoso, J. M. S., Mata, J. A., Peris, E., and Royo, B. (2011) Enantiomerically pure cyclopentadienyl- and indenyl-functionalized N-heterocyclic carbene complexes of iridium and rhodium, Organometallics 30(16): 4437-4442 http://dx.doi.org/10.1021/om200523h
60. da Costa, G., Gomes, R. A., Guerreiro, A., Mateus, E., Monteiro, E., Barroso, E., Coelho, A. V., Freire, A. P., and Cordeiro, C. (2011) Beyond genetic factors in familial amyloidotic polyneuropathy: protein glycation and the loss of fibrinogen's chaperone activity, PLoS ONE 6(10):e24850 http://dx.doi.org/10.1371/journal.pone.0024850
61. Costa, P. M., Miguel, C., Caeiro, S., Lobo, J., Martins, M., Ferreira, A. M., Caetano, M., Vale, C., DelValls, T. A., and Costa, M. H. (2011) Transcriptomic analyses in a benthic fish exposed to contaminated estuarine sediments through laboratory and in situ bioassays, Ecotoxicology 20(8): 1749-1764 http://dx.doi.org/10.1007/s10646-011-0708-z
62. Courtois, B., Greco, R., Bruschi, G., Frouin, J., Ahmadi, N., Droc, G., Hamelin, C., Ruiz, M., Evrard, J. C., Katsantonis, D., Oliveira, M., Negrao, S., Cavigiolo, S., Lupotto, E., and Piffanelli, P. (2011) Molecular characterization of the European rice collection in view of association mapping, Plant Genetic Resources-Characterization and Utilization 9(2): 233-235 http://dx.doi.org/10.1017/s147926211100027x
63. Damas, J. M., Oliveira, A. S. F., Baptista, A. M., and Soares, C. M. (2011) Structural consequences of ATP hydrolysis on the ABC transporter NBD dimer: molecular dynamics studies of HlyB, Protein Science 20(7): 1220-1230 http://dx.doi.org/10.1002/pro.650
64. Dantas, J. M., Saraiva, I. H., Morgado, L., Silva, M. A., Schiffer, M.,Salgueiro, C. A., and Louro, R. O. (2011) Orientation of the axial ligands and magnetic properties of the hemes in the cytochrome c(7)family from Geobacter sulfurreducens determined by paramagnetic NMR, Dalton Transactions 40(47): 12713-12718 http://dx.doi.org/10.1039/c1dt10975h
65. Deive, F. J., Rodriguez, A., Marrucho, I. M., and Rebelo, L. P. N. (2011) Aqueous biphasic systems involving alkylsulfate-based ionic liquids, Journal of Chemical Thermodynamics 43(11): 1565-1572 http://dx.doi.org/10.1016/j.jct.2011.04.024
66. Deive, F. J., Rodriguez, A., Pereiro, A. B., Araujo, J. M. M., Longo, M. A., Coelho, M. A. Z., Lopes, J. N. C., Esperanca, J. M. S. S., Rebelo, L. P. N., and Marrucho, I. M. (2011) Ionic liquid-based aqueous biphasic system for lipase extraction, Green Chemistry 13(2): 390-396 http://dx.doi.org/10.1039/c0gc00075b
67. Deive, F. J., Rodriguez, A., Varela, A., Rodrigues, C., Leitao, M. C., Houbraken, J., Pereiro, A. B., Longo, M. A., Sanroman, M. A., Samson, R. A., Rebelo, L. P. N., and Pereira, C. S. (2011) Impact of ionic liquids on extreme microbial biotypes from soil, Green Chemistry 13(3): 687-696 http://dx.doi.org/10.1039/c0gc00369g
68. Deus, H. F., Correa, M. C., Stanislaus, R., Miragaia, M., Maass, W., de Lencastre, H., Fox, R., and Almeida, J. S. (2011) S3QL: A distributed domain specific language for controlled semantic integration of life sciences data, BMC Bioinformatics 12, ART285  http://dx.doi.org/10.1186/1471-2105-12-285
69. Di Pippo, F., Bohn, A., Cavalieri, F., and Albertano, P. (2011) H-1-NMR analysis of water mobility in cultured phototrophic biofilms, Biofouling 27(3): 327-336 http://dx.doi.org/10.1080/08927014.2011.565123
70. Diaz-Moreno, I., Garcia-Heredia, J. M., Diaz-Quintana, A., Teixeira, M., and De la Rosa, M. A. (2011) Nitration of tyrosines 46 and 48 induces the specific degradation of cytochrome c upon change of the heme iron state to high-spin, Biochimica Et Biophysica Acta-Bioenergetics 1807(12): 1616-1623 http://dx.doi.org/10.1016/j.bbabio.2011.09.012
71. Elberse, K. E. M., Nunes, S., Sa-Leao, R., van der Heide, H. G. J., and Schouls, L. M. (2011) Multiple-locus variable number tandem repeat analysis for Streptococcus pneumoniae: comparison with PFGE and MLST, PLoS ONE 6(5): e19668 http://dx.doi.org/10.1371/journal.pone.0019668
72. Escrevente, C., Keller, S., Altevogt, P., and Costa, J. (2011) Interaction and uptake of exosomes by ovarian cancer cells, BMC Cancer 11, ART108  http://dx.doi.org/10.1186/1471-2407-11-108
73. Esquivel, M. G., Amaro, H. M., Pinto, T. S., Fevereiro, P. S., and Malcata, F. X. (2011) Efficient H(2) production via Chlamydomonas reinhardtii, Trends in Biotechnology 29(12): 595-600 http://dx.doi.org/10.1016/j.tibtech.2011.06.008
74. Fagone, P., Mangano, K., Quattrocchi, C., Motterlini, R., Di Marco, R., Magro, G., Penacho, N., Romao, C. C., and Nicoletti, F. (2011) Prevention of clinical and histological signs of proteolipid protein (PLP)-induced experimental allergic encephalomyelitis (EAE) in mice by the water-soluble carbon monoxide-releasing molecule (CORM)-A1, Clinical and Experimental Immunology 163(3): 368-374 http://dx.doi.org/10.1111/j.1365-2249.2010.04303.x
75. Farinha, A. P., Irar, S., de Oliveira, E., Oliveira, M. M., and Pages, M. (2011) Novel clues on abiotic stress tolerance emerge from embryo proteome analyses of rice varieties with contrasting stress adaptation, Proteomics 11(12): 2389-2405 http://dx.doi.org/10.1002/pmic.201000570
76. Fernandes, A. M., Rocha, M. A. A., Freire, M. G., Marrucho, I. M., Coutinho, J. A. P., and Santos, L. M. N. B. F. (2011) Evaluation of cation-anion interaction strength in ionic liquids, Journal of Physical Chemistry B 115(14): 4033-4041 http://dx.doi.org/10.1021/jp201084x
77. Fernandes, A. S., Cabral, M. F., Costa, J., Castro, M., Delgado, R., Drew, M. G. B., and Felix, V. (2011) Two macrocyclic pentaaza compounds containing pyridine evaluated as novel chelating agents in copper(II) and nickel(II) overload, Journal of Inorganic Biochemistry 105(3): 410-419 http://dx.doi.org/10.1016/j.jinorgbio.2010.11.014
78. Fernandes, A. T., Pereira, M. M., Silva, C. S., Lindley, P. F., Bento, I., Melo, E. P., and Martins, L. O. (2011) The removal of a disulfide bridge in CotA-laccase changes the slower motion dynamics involved in copper binding but has no effect on the thermodynamic stability, Journal of Biological Inorganic Chemistry 16(4): 641-651 http://dx.doi.org/10.1007/s00775-011-0768-9
79. Fernandes, H. L., Albert, M. V., and Kording, K. P. (2011) Measuring generalization of visuomotor perturbations in wrist movements using mobile phones, PLoS ONE 6(5): e20290 http://dx.doi.org/10.1371/journal.pone.0020290
80. Fernandes, J. A., Paz, F. A. A., and Romao, C. C. (2011) cis-Di-mu-oxido-bis (N,N-diethyldithiocarbamato-kappa S-2,S ')oxidomolybdenum(V) (Mo-Mo) tetrahydrofuran monosolvate, Acta Crystallographica Section E-Structure Reports Online 67, M288-U2128 http://dx.doi.org/10.1107/s1600536811003187
81. Ferreira, A. R., Dias, J. M. L., Teixeira, A. P., Carinhas, N., Portela, R. M. C., Isidro, I. A., von Stosch, M., and Oliveira, R. (2011) Projection to latent pathways (PLP): a constrained projection to latent variables (PLS) method for elementary flux modes discrimination, BMC Systems Biology 5, ART181  http://dx.doi.org/10.1186/1752-0509-5-181
82. Filipe, L. C. S., Machuqueiro, M., and Baptista, A. M. (2011) Unfolding the conformational behavior of peptide dendrimers: insights from molecular dynamics simulations, Journal of the American Chemical Society 133(13): 5042-5052 http://dx.doi.org/10.1021/ja111001v
83. Fondevilla, S., Almeida, N. F., Satovic, Z., Rubiales, D., Patto, M. C. V., Cubero, J. I., and Torres, A. M. (2011) Identification of common genomic regions controlling resistance to Mycosphaerella pinodes, earliness and architectural traits in different pea genetic backgrounds, Euphytica 182(1): 43-52 http://dx.doi.org/10.1007/s10681-011-0460-8
84. Fonseca, C., Olofsson, K., Ferreira, C., Runquist, D., Fonseca, L. L., Hahn-Hagerdal, B., and Liden, G. (2011) The glucose/xylose facilitator Gxf1 from Candida intermedia expressed in a xylose-fermenting industrial strain of Saccharomyces cerevisiae increases xylose uptake in SSCF of wheat straw, Enzyme and Microbial Technology 48(6-7): 518-525 http://dx.doi.org/10.1016/j.enzmictec.2011.02.010
85. Fonseca, L. L., Sanchez, C., Santos, H., and Voit, E. O. (2011) Complex coordination of multi-scale cellular responses to environmental stress, Molecular Biosystems 7(3): 731-741 http://dx.doi.org/10.1039/c0mb00102c
86. Franco, C. F., Santos, R., and Coelho, A. V. (2011) Exploring the proteome of an echinoderm nervous system: 2-DE of the sea star radial nerve cord and the synaptosomal membranes subproteome, Proteomics 11(7): 1359-1364 http://dx.doi.org/10.1002/pmic.201000541
87. Franco, C. F., Santos, R., and Coelho, A. V. (2011) Proteome characterization of sea star coelomocytes - the innate immune effector cells of echinoderms, Proteomics 11(17): 3587-3592 http://dx.doi.org/10.1002/pmic.201000745
88. Freire, M. G., Louros, C. L. S., Rebelo, L. P. N., and Coutinho, J. A. P. (2011) Aqueous biphasic systems composed of a water-stable ionic liquid plus carbohydrates and their applications, Green Chemistry 13(6): 1536-1545 http://dx.doi.org/10.1039/c1gc15110j
89. Galego, L. R., Da Silva, J. P., Almeida, V. R., Bronze, M. R., and Boas, L. V. (2011) Preparation of novel distinct highly aromatic liquors using fruit distillates, International Journal of Food Science and Technology 46(1): 67-73 http://dx.doi.org/10.1111/j.1365-2621.2010.02452.x
90. Gamelas, C. A., Bandeira, N. A. G., Pereira, C. C. L., Calhorda, M. J., Herdtweck, E., Machuqueiro, M., Romao, C. C., and Veiros, L. F. (2011) Indenyl ring slippage in crown thioether complexes IndMo(CO)(2)L (+) and C-S activation of trithiacyclononane: experimental and theoretical studies, Dalton Transactions 40(40): 10513-10525 http://dx.doi.org/10.1039/c1dt10607d
91. Garcia-Heredia, J. M., Diaz-Quintana, A., Salzano, M., Orzaez, M., Perez-Paya, E., Teixeira, M., De la Rosa, M. A., and Diaz-Moreno, I. (2011) Tyrosine phosphorylation turns alkaline transition into a biologically relevant process and makes human cytochrome c behave as an anti-apoptotic switch, Journal of Biological Inorganic Chemistry 16(8): 1155-1168 http://dx.doi.org/10.1007/s00775-011-0804-9
92. Gaspar, P., Neves, A. R., Gasson, M. J., Shearman, C. A., and Santos, H. (2011) High yields of 2,3-butanediol and mannitol in Lactococcus lactis through engineering of NAD(+) cofactor recycling, Applied and Environmental Microbiology 77(19): 6826-6835 http://dx.doi.org/10.1128/aem.05544-11
93. Gaspar, V. M., Correia, I. J., Sousa, A., Silva, F., Paquete, C. M., Queiroz, J. A., and Sousa, F. (2011) Nanoparticle mediated delivery of pure P53 supercoiled plasmid DNA for gene therapy, Journal of Controlled Release 156(2): 212-222 http://dx.doi.org/10.1016/j.jconrel.2011.08.007
94. Ghabbour, N., Lamzira, Z., Thonart, P., Peres, C., Markaoui, M., and Asehraou, A. (2011) Selection of oleuropein-degrading lactic acid bacteria strains isolated from fermenting Moroccan green olives, Grasas y aceites 62(1): 84-89 http://dx.doi.org/10.3989/gya.055510
95. Gohring, N., Fedtke, I., Xia, G. Q., Jorge, A. M., Pinho, M. G., Bertsche, U., and Peschel, A. (2011) New Role of the Disulfide Stress Effector YjbH in beta-Lactam Susceptibility of Staphylococcus aureus, Antimicrobial Agents and Chemotherapy 55(12): 5452-5458 http://dx.doi.org/10.1128/aac.00286-11
96. Goncalves, C. M. B., Tome, L. C., Coutinho, J. A. P., and Marrucho, I. M. (2011) Addition of alpha-tocopherol on poly(lactic acid): thermal, mechanical, and sorption properties, Journal of Applied Polymer Science 119(4): 2468-2475 http://dx.doi.org/10.1002/app.32952
97. Goncalves, S., Esteves, A. M., Borges, N., Santos, H., and Matias, P. M. (2011) Crystallization and preliminary X-ray analysis of mannosyl-3-phosphoglycerate phosphatase from Thermus thermophilus HB27, Acta Crystallographica Section F-Structural Biology and Crystallization Communications 67, 390-396 http://dx.doi.org/10.1107/s1744309111002843
98. Goncalves, S., Esteves, A. M., Santos, H., Borges, N., and Matias, P. M. (2011) Three-dimensional structure of mannosyl-3-phosphoglycerate phosphatase from Thermus thermophilus HB27: a new member of the haloalcanoic acid dehalogenase superfamily, Biochemistry 50(44): 9551-9567 http://dx.doi.org/10.1021/bi201171h
99. Goncalves, V. L., Saraiva, L. M., and Teixeira, M. (2011) Gene expression study of the flavodi-iron proteins from the cyanobacterium Synechocystis sp PCC6803, Biochemical Society Transactions 39, 216-218 http://dx.doi.org/10.1042/bst0390216
100. Gorynia, S., Bandeiras, T. M., Pinho, F. G., McVey, C. E., Vonrhein, C., Round, A., Svergun, D. I., Donner, P., Matias, P. M., and Carrondo, M. A. (2011) Structural and functional insights into a dodecameric molecular machine - the RuvBL1/RuvBL2 complex, Journal of Structural Biology 176(3): 279-291 http://dx.doi.org/10.1016/j.jsb.2011.09.001
101. Goulao, L. F., Vieira-Silva, S., and Jackson, P. A. (2011) Association of hemicellulose- and pectin-modifying gene expression with Eucalyptus globulus secondary growth, Plant Physiology and Biochemistry 49(8): 873-881 http://dx.doi.org/10.1016/j.plaphy.2011.02.020
102. Guedes, A. C., Amaro, H. M., and Malcata, F. X. (2011) Microalgae as sources of carotenoids, Marine Drugs 9(4): 625-644 http://dx.doi.org/10.3390/md9040625
103. Guinote, I. B., Matos, R. G., Freire, P., and Arraiano, C. M. (2011) BolA affects cell growth, and binds to the promoters of penicillin-binding proteins 5 and 6 and regulates their expression, Journal of Microbiology and Biotechnology 21(3): 243-251 http://dx.doi.org/10.4014/jmb.1009.09034
104. Gundogdu, M. E., Kawai, Y., Pavlendova, N., Ogasawara, N., Errington, J., Scheffers, D. J., and Hamoen, L. W. (2011) Large ring polymers align FtsZ polymers for normal septum formation, Embo Journal 30(3): 617-626 http://dx.doi.org/10.1038/emboj.2010.345
105. Gutierrez-Sanchez, C., Olea, D., Marques, M., Fernandez, V. M., Pereira, I. A. C., Velez, M., and De Lacey, A. L. (2011) Oriented immobilization of a membrane-bound hydrogenase onto an electrode for direct electron transfer, Langmuir 27(10): 6449-6457 http://dx.doi.org/10.1021/la200141t
106. Gyorgy, E., del Pino, A. P., Roqueta, J., Ballesteros, B., Miguel, A. S., Maycock, C. D., and Oliva, A. G. (2011) Synthesis and laser immobilization onto solid substrates of CdSe/ZnS core shell quantum dots, Journal of Physical Chemistry C 115(31): 15210-15216 http://dx.doi.org/10.1021/jp203051b
107. Henriques, B. J., Fisher, M. T., Bross, P., and Gomes, C. M. (2011) A polymorphic position in electron transfer flavoprotein modulates kinetic stability as evidenced by thermal stress, FEBS Letters 585(3): 505-510 http://dx.doi.org/10.1016/j.febslet.2011.01.002
108. Henriques, M. X., Rodrigues, T., Carido, M., Ferreira, L., and Filipe, S. R. (2011) Synthesis of capsular polysaccharide at the division septum of Streptococcus pneumoniae is dependent on a bacterial tyrosine kinase, Molecular Microbiology 82(2): 515-534 http://dx.doi.org/10.1111/j.1365-2958.2011.07828.x
109. Hiller, N. L., Eutsey, R. A., Powell, E., Earl, J. P., Janto, B., Martin, D. P., Dawid, S., Ahmed, A., Longwell, M. J., Dahlgren, M. E., Ezzo, S., Tettelin, H., Daugherty, S. C., Mitchell, T. J., Hillman, T. A., Buchinsky, F. J., Tomasz, A., de Lencastre, H., Sá-Leão, R., Post, J. C., Hu, F. Z., and Ehrlich, G. D. (2011) Differences in genotype and virulence among four multidrug-resistant Streptococcus pneumoniae isolates belonging to the PMEN1 clone, PLoS ONE 6(12): e28850 http://dx.doi.org/10.1371/journal.pone.0028850
110. Honzicek, J., Romao, C. C., Calhorda, M. J., Mukhopadhyay, A., Vinklarek, J., and Padelkova, Z. (2011) Reaction of spiro 2.4 hepta-4,6-diene with molybdenum(II) indenyl compounds: effects of substitution in the indenyl ligand, Organometallics 30(4): 714-722 http://dx.doi.org/10.1021/om100840r
111. Iranzo, O. (2011) Manganese complexes displaying superoxide dismutase activity: a balance between different factors, Bioorganic Chemistry 39(2): 73-87 http://dx.doi.org/10.1016/j.bioorg.2011.02.001
112. Iranzo, O., Chakraborty, S., Hemmingsen, L., and Pecoraro, V. L. (2011) Controlling and fine tuning the physical properties of two identical metal coordination sites in de novo designed three stranded coiled coil peptides, Journal of the American Chemical Society 133(2): 239-251 http://dx.doi.org/10.1021/ja104433n
113. Jin, Y., Amaral, A., McCann, A., and Brennan, L. (2011) Homocysteine levels impact directly on epigenetic reprogramming in astrocytes, Neurochemistry International 58(7): 833-838 http://dx.doi.org/10.1016/j.neuint.2011.03.012
114. Jorge, A. M., Hoiczyk, E., Gomes, J. P., and Pinho, M. G. (2011) EzrA contributes to the regulation of cell size in Staphylococcus aureus, PLoS ONE 6(11): e27542 http://dx.doi.org/10.1371/journal.pone.0027542
115. Jorge, C. D., Ventura, R., Maycock, C., Outeiro, T. F., Santos, H., and Costa, J. (2011) Assessment of the efficacy of solutes from extremophiles on protein aggregation in cell models of Huntington's and Parkinson's diseases, Neurochemical Research 36, 1005-1011 http://dx.doi.org/10.1007/s11064-011-0440-3
116. Kowacz, M., Groves, P., Esperanca, J. M. S. S., and Rebelo, L. P. N. (2011) On the use of ionic liquids to tune crystallization, Crystal Growth & Design 11(3): 684-691 http://dx.doi.org/10.1021/cg101061p
117. Lamego, J., Coroadinha, A. S., and Simplicio, A. L. (2011) Detection and quantification of carboxylesterase 2 activity by capillary electrophoresis, Analytical Chemistry 83(3): 881-887 http://dx.doi.org/10.1021/ac102547c
118. Lamosa, P., Mingote, A. I., Groudieva, T., Klippel, B., Egorova, K., Jabbour, D., Santos, H., and Antranikian, G. (2011) Gluconeotrehalose is the principal organic solute in the psychrotolerant bacterium Carnobacterium strain 17-4, Extremophiles 15(4): 463-472 http://dx.doi.org/10.1007/s00792-011-0377-0
119. Lamy, E., da Costa, G., Santos, R., Silva, F. C. E., Potes, J., Pereira, A., Coelho, A. V., and Baptista, E. S. (2011) Effect of condensed tannin ingestion in sheep and goat parotid saliva proteome, Journal of Animal Physiology and Animal Nutrition 95(3): 304-312 http://dx.doi.org/10.1111/j.1439-0396.2010.01055.x
120. Lamy, E., Rawel, H., Schweigert, F. J., Silva, F. C. E., Ferreira, A., Costa, A. R., Antunes, C., Almeida, A. M., Coelho, A. V., and Sales-Baptista, E. (2011) The effect of tannins on mediterranean ruminant ingestive behavior: the role of the oral cavity, Molecules 16(4): 2766-2784 http://dx.doi.org/10.1016/j.tiv.2011.02.002
121. Leite, S. B., Teixeira, A. P., Miranda, J. P., Tostoes, R. M.,Clemente, J. J., Sousa, M. F., Carrondo, M. J. T., and Alves, P. M. (2011) Merging bioreactor technology with 3D hepatocyte-fibroblast culturing approaches: improved in vitro models for toxicological applications, Toxicology in Vitro 25(4): 825-832 http://dx.doi.org/10.1016/j.tiv.2011.02.002
122. de Lencastre, H., and Tomasz, A. (2011) The CEM-NET initiative: molecular biology and epidemiology in alliance - tracking antibiotic-resistant staphylococci and pneumococci in hospitals and in the community, International Journal of Medical Microbiology 301(8): 623-629 http://dx.doi.org/10.1016/j.ijmm.2011.09.010
123. Lesch, H. P., Laitinen, A., Peixoto, C., Vicente, T., Makkonen, K. E., Laitinen, L., Pikkarainen, J. T., Samaranayake, H., Alves, P. M., Carrondo, M. J. T., Yla-Herttuala, S., and Airenne, K. J. (2011) Production and purification of lentiviral vectors generated in 293T suspension cells with baculoviral vectors, Gene Therapy 18(6), 531-538 http://dx.doi.org/10.1038/gt.2010.162
124. Lima, L. M. P., Delgado, R., Plutnar, J., Hermann, P., and Kotek, J. (2011) A new tris(phosphonomethyl) monoacetic acid cyclam derivative: synthesis, acid-base and metal complexation studies, European Journal of Inorganic Chemistry  2011(4): 527-538 http://dx.doi.org/10.1002/ejic.201000919
125. Locke, D. P., Hillier, L. W., Warren, W. C., Worley, K. C., Nazareth, L. V., Muzny, D. M., Yang, S. P., Wang, Z. Y., Chinwalla, A. T., Minx, P., Mitreva, M., Cook, L., Delehaunty, K. D., Fronick, C., Schmidt, H., Fulton, L. A., Fulton, R. S., Nelson, J. O., Magrini, V., Pohl, C., Graves, T. A., Markovic, C., Cree, A., Dinh, H. H., Hume, J., Kovar, C. L., Fowler, G. R., Lunter, G., Meader, S., Heger, A., Ponting, C. P., Marques-Bonet, T., Alkan, C., Chen, L., Cheng, Z., Kidd, J. M., Eichler, E. E., White, S., Searle, S., Vilella, A. J., Chen, Y. A., Flicek, P., Ma, J. A., Raney, B., Suh, B., Burhans, R., Herrero, J., Haussler, D., Faria, R., Fernando, O., Darre, F., Farre, D., Gazave, E., Oliva, M., Navarro, A., Roberto, R., Capozzi, O., Archidiacono, N., Della Valle, G., Purgato, S., Rocchi, M., Konkel, M. K., Walker, J. A., Ullmer, B., Batzer, M. A., Smit, A. F. A., Hubley, R., Casola, C., Schrider, D. R., Hahn, M. W., Quesada, V., Puente, X. S., Ordonez, G. R., Lopez-Otin, C., Vinar, T., Brejova, B., Ratan, A., Harris, R. S., Miller, W., Kosiol, C., Lawson, H. A., Taliwal, V., Martins, A. L., Siepel, A., RoyChoudhury, A., Ma, X., Degenhardt, J., Bustamante, C. D., Gutenkunst, R. N., Mailund, T., Dutheil, J. Y., Hobolth, A., Schierup, M. H., Ryder, O. A., Yoshinaga, Y., de Jong, P. J., Weinstock, G. M., Rogers, J., Mardis, E. R., Gibbs, R. A., and Wilson, R. K. (2011) Comparative and demographic analysis of orang-utan genomes, Nature 469(7331): 529-533 http://dx.doi.org/10.1038/nature09687
126. Lopes, C. M., Santos, T. P., Monteiro, A., Rodrigues, M. L., Costa, J. M., and Chaves, M. M. (2011) Combining cover cropping with deficit irrigation in a Mediterranean low vigor vineyard, Scientia Horticulturae 129(4) : 603-612 http://dx.doi.org/10.1016/j.scienta.2011.04.033
127. Lopes, J. N. C., Gomes, M. F. C., Husson, P., Padua, A. A. H., Rebelo, L. P. N., Sarraute, S., and Tariq, M. (2011) Polarity, viscosity, and ionic conductivity of liquid mixtures containing C(4)C(1)im Ntf(2) and a molecular component, Journal of Physical Chemistry B 115(19): 6088-6099 http://dx.doi.org/10.1021/jp2012254
128. Lorenz, W. W., Alba, R., Yu, Y. S., Bordeaux, J. M., Simoes, M., and Dean, J. F. D. (2011) Microarray analysis and scale-free gene networks identify candidate regulators in drought-stressed roots of loblolly pine ( P. taeda L.), BMC Genomics 12, ART264  http://dx.doi.org/10.1186/1471-2164-12-264
129. Lourenco, E. C., and Ventura, M. R. (2011) The synthesis of compatible solute analogues-solvent effects on selective glycosylation, Carbohydrate Research 346(2): 163-168 http://dx.doi.org/10.1016/j.carres.2010.08.007
130. Lourenco, E. C., and Ventura, M. R. (2011) Synthesis of potassium (2R)-2-O-alpha-D-mannopyranosyl-(1 -> 2)-alpha-D-glucopyranosyl-2,3-dihydroxypropanoate: a naturally compatible solute, European Journal of Organic Chemistry  2011(33): 6698-6703 http://dx.doi.org/10.1002/ejoc.201100934
131. Lourenco, T., Saibo, N., Batista, R., Ricardo, C. P., and Oliveira, M. M. (2011) Inducible and constitutive expression of HvCBF4 in rice leads to differential gene expression and drought tolerance, Biologia Plantarum 55(4): 653-663 http://dx.doi.org/10.1007/s10535-011-0164-x
132. Lousa, D., Baptista, A. M., and Soares, C. M. (2011) Structural determinants of ligand imprinting: a molecular dynamics simulation study of subtilisin in aqueous and apolar solvents, Protein Science 20(2): 379-386 http://dx.doi.org/10.1002/pro.569
133. Lucas, T. G., Henriques, B. J., Rodrigues, J. V., Bross, P., Gregersen, N., and Gomes, C. M. (2011) Cofactors and metabolites as potential stabilizers of mitochondrial acyl-CoA dehydrogenases, Biochimica Et Biophysica Acta-Molecular Basis of Disease 1812(12): 1658-1663 http://dx.doi.org/10.1016/j.bbadis.2011.09.009
134. Machado, E., Kandzia, S., Carilho, R., Altevogt, P., Conradt, H. S., and Costa, J. (2011) N-Glycosylation of total cellular glycoproteins from the human ovarian carcinoma SKOV3 cell line and of recombinantly expressed human erythropoietin, Glycobiology 21(3): 376-386 http://dx.doi.org/10.1093/glycob/cwq170
135. Machuqueiro, M., and Baptista, A. M. (2011) Is the prediction of pK(a) values by constant-pH molecular dynamics being hindered by inherited problems?, Proteins-Structure Function and Bioinformatics 79(12): 3437-3447 http://dx.doi.org/10.1002/prot.23115
136. Madureira, A. R., Amorim, M., Gomes, A. M., Pintado, M. E., and Malcata, F. X. (2011) Protective effect of whey cheese matrix on probiotic strains exposed to simulated gastrointestinal conditions, Food Research International 44(1): 465-470 http://dx.doi.org/10.1016/j.foodres.2010.09.010
137. Madureira, A. R., Brandao, T., Gomes, A. M., Pintado, M. E., and Malcata, F. X. (2011) Technological optimization of manufacture of probiotic whey cheese matrices, Journal of Food Science 76(2): E203-E211 http://dx.doi.org/10.1111/j.1750-3841.2010.02008.x
138. Madureira, A. R., Pintado, A. I., Gomes, A. M., Pintado, M. E., and Malcata, F. X. (2011) Rheological, textural and microstructural features of probiotic whey cheeses, Lwt-Food Science and Technology 44(1): 75-81 http://dx.doi.org/10.1016/j.lwt.2010.06.030
139. Madureira, A. R., Pintado, M. E., Gomes, A. M. P., and Malcata, F. X. (2011) Incorporation of probiotic bacteria in whey cheese: decreasing the risk of microbial contamination, Journal of Food Protection 74(7): 1194-1199 http://dx.doi.org/10.4315/0362-028x.jfp-10-217
140. Malcata, F. X. (2011) Microalgae and biofuels: a promising partnership?, Trends in Biotechnology 29(11): 542-549 http://dx.doi.org/10.1016/j.tibtech.2011.05.005
141. Marazioti, A., Bucci, M., Coletta, C., Vellecco, V., Baskaran, P., Szabo, C., Cirino, G., Marques, A. R., Guerreiro, B., Goncalves, A. M. L., Seixas, J. D., Beuve, A., Romao, C. C., and Papapetropoulos, A. (2011) Inhibition of nitric oxide-stimulated vasorelaxation by carbon monoxide-releasing molecules, Arteriosclerosis Thrombosis and Vascular Biology 31(11): 2570-U2519 http://dx.doi.org/10.1161/atvbaha.111.229039
142. Marques, A. P., Duarte, A. J., Chambel, L., Teixeira, M. F., San Romao, M. V., and Tenreiro, R. (2011) Genomic diversity of Oenococcus oeni from different winemaking regions of Portugal, International Microbiology : the official journal of the Spanish Society for Microbiology 14(3): 155-162 http://dx.doi.org/10.2436/20.1501.01.144
143. Marques, J. C., Lamosa, P., Russell, C., Ventura, R., Maycock, C., Semmelhack, M. F., Miller, S. T., and Xavier, K. B. (2011) Processing the interspecies quorum-sensing signal autoinducer-2 (AI-2) CHARACTERIZATION OF PHOSPHO-(S)-4,5-DIHYDROXY-2,3-PENTANEDIONE ISOMERIZATION BY LsrG PROTEIN, Journal of Biological Chemistry 286(20) 18331-18343 http://dx.doi.org/10.1074/jbc.M111.230227
144. Martinez-Barajas, E., Delatte, T., Schluepmann, H., de Jong, G. J., Somsen, G. W., Nunes, C., Primavesi, L. F., Coello, P., Mitchell, R. A. C., and Paul, M. J. (2011) Wheat grain development is characterized by remarkable trehalose 6-phosphate accumulation pregrain filling: tissue distribution and relationship to SNF1-related protein kinase1 activity, Plant Physiology 156(1): 373-381 http://dx.doi.org/10.1104/pp.111.174524
145. Mateus, P., Delgado, R., Brandao, P., and Felix, V. (2011) Recognition of oxalate by a copper(II) polyaza macrobicyclic complex, Chemistry-a European Journal 17(25): 7020-7031 http://dx.doi.org/10.1002/chem.201100428
146. Mateus, P., Delgado, R., Lloret, F., Cano, J., Brandao, P., and Felix, V. (2011) A trinuclear copper(II) cryptate and its mu(3)-CO(3) cascade complex: thermodynamics, structural and magnetic properties, Chemistry-a European Journal 17(40): 11193-11203 http://dx.doi.org/10.1002/chem.201101372
147. Mateus, P., Li, F., Esteves, C. V., Delgado, R., Brandao, P., and Felix, V. (2011) Properties of metal complexes of a new dioxadiaza macrocycle containing a dibenzofuran unit and acetate pendant arms, European Journal of Inorganic Chemistry 2011(30): 4700-4708 http://dx.doi.org/10.1002/ejic.201100612
148. Matos, R. G., Barbas, A., Gomez-Puertas, P., and Arraiano, C. M. (2011) Swapping the domains of exoribonucleases RNase II and RNase R: conferring upon RNase II the ability to degrade ds RNA, Proteins-Structure Function and Bioinformatics 79(6): 1853-1867 http://dx.doi.org/10.1002/prot.23010
149. Mau, M., de Almeida, A. M., Coelho, A. V., and Sudekum, K. H. (2011) First identification of tannin-binding proteins in saliva of Papio hamadryas using MS/MS mass spectrometry, American Journal of Primatology 73(9): 896-902 http://dx.doi.org/10.1002/ajp.20958
150. Mendes, S., Farinha, A., Ramos, C. G., Leitao, J. H., Viegas, C. A., and Martins, L. O. (2011) Synergistic action of azoreductase and laccase leads to maximal decolourization and detoxification of model dye-containing wastewaters, Bioresource Technology 102(21): 9852-9859 http://dx.doi.org/10.1016/j.biortech.2011.07.108
151. Mendes, S., Pereira, L., Batista, C., and Martins, L. O. (2011) Molecular determinants of azo reduction activity in the strain Pseudomonas putida MET94, Applied Microbiology and Biotechnology 92(2): 393-405 http://dx.doi.org/10.1007/s00253-011-3366-4
152. Miguel, C., and Marum, L. (2011) An epigenetic view of plant cells cultured in vitro: somaclonal variation and beyond, Journal of Experimental Botany 62(11): 3713-3725 http://dx.doi.org/10.1093/jxb/err155
153. Milheirico, C., Portelinha, A., Krippahl, L., de Lencastre, H., and Oliveira, D. C. (2011) Evidence for a purifying selection acting on the beta-lactamase locus in epidemic clones of methicillin-resistant Staphylococcus aureus, BMC Microbiology 11, ART76 http://dx.doi.org/10.1186/1471-2180-11-76
154. Mira, N. P., Henriques, S. F., Keller, G., Teixeira, M. C., Matos, R. G., Arraiano, C. M., Winge, D. R., and Sa-Correia, I. (2011) Identification of a DNA-binding site for the transcription factor Haa1, required for Saccharomyces cerevisiae response to acetic acid stress, Nucleic Acids Research 39(16): 6896-6907 http://dx.doi.org/10.1093/nar/gkr228
155. Molinas, M. F., De Candia, A., Szajnman, S. H., Rodriguez, J. B., Marti, M., Pereira, M., Teixeira, M., Todorovic, S., and Murgida, D. H. (2011) Electron transfer dynamics of Rhodothermus marinus caa(3) cytochrome c domains on biomimetic films, Physical Chemistry Chemical Physics 13(40): 18088-18098 http://dx.doi.org/10.1039/c1cp21925a
156. Moreira, R. N., Dressaire, C., Domingues, S., and Arraiano, C. M. (2011) A new target for an old regulator: H-NS represses transcription of bolA morphogene by direct binding to both promoters, Biochemical and Biophysical Research Communications 411(1): 50-55 http://dx.doi.org/10.1016/j.bbrc.2011.06.084
157. Morgado, L., Paixao, V. B., Salgueiro, C. A., and Bruix, M. (2011) Backbone, side chain and heme resonance assignments of the triheme cytochrome PpcA from Geobacter sulfurreducens, Biomolecular NMR Assignments 5(1): 113-116 http://dx.doi.org/10.1007/s12104-010-9280-3
158. Muller, S., Hoffmann, T., Santos, H., Saum, S. H., Bremer, E., and Muller, V. (2011) Bacterial abl-like genes: production of the archaeal osmolyte N(epsilon)-acetyl-beta-lysine by homologous overexpression of the yodP-kamA genes in Bacillus subtilis, Applied Microbiology and Biotechnology 91(3): 689-697 http://dx.doi.org/10.1007/s00253-011-3301-8
159. Ndukum, J., Fonseca, L. L., Santos, H., Voit, E. O., and Datta, S. (2011) Statistical inference methods for sparse biological time series data, BMC Systems Biology 5, ART57  http://dx.doi.org/10.1186/1752-0509-5-57
160. Negrao, S., Almadanim, C., Pires, I., McNally, K. L., and Oliveira, M. M. (2011) Use of EcoTILLING to identify natural allelic variants of rice candidate genes involved in salinity tolerance, Plant Genetic Resources-Characterization and Utilization 9(2): 300-304 http://dx.doi.org/10.1017/s1479262111000566
161. Negrao, S., Courtois, B., Ahmadi, N., Abreu, I., Saibo, N., and Oliveira, M. M. (2011) Recent updates on salinity stress in rice: from physiological to molecular responses, Critical Reviews in Plant Sciences 30(4): 329-377 http://dx.doi.org/10.1080/07352689.2011.587725
162. Noronha, P. (2011) Yeast biopaintings: biofilms as an artistic instrument, Leonardo 44(1): 38-+ http://dx.doi.org/10.1162/LEON_a_00091
163. de Noronha, R. G., Romao, C. C., and Fernandes, A. C. (2011) MoO2Cl2 as a novel catalyst for the synthesis of alpha-aminophosphonates, Catalysis Communications 12(5): 337-340 http://dx.doi.org/10.1016/j.catcom.2010.10.005
164. Nunes, A. V. M., and Duarte, C. M. M. (2011) Dense CO(2) as a Solute, Co-Solute or Co-Solvent in Particle Formation Processes: A Review, Materials 4(11): 2017-2041 http://dx.doi.org/10.3390/ma4112017
165. Oliveira, A. S., Baptista, A. M., and Soares, C. M. (2011) Conformational changes induced by ATP-hydrolysis in an ABC transporter: a molecular dynamics study of the Sav1866 exporter, Proteins-Structure Function and Bioinformatics 79(6): 1977-1990 http://dx.doi.org/10.1002/prot.23023
166. Oliveira, A. S. F., Baptista, A. M., and Soares, C. M. (2011) Inter-domain communication mechanisms in an ABC importer: a molecular dynamics study of the MalFGK(2)E complex, PLoS Computational Biology 7(8): e1002128  http://dx.doi.org/10.1371/journal.pcbi.1002128
167. Oliveira, D. C., and de Lencastre, H. (2011) Methicillin-resistance in Staphylococcus aureus is not affected by the overexpression in trans of the mecA gene repressor: a surprising observation, PLoS ONE 6(8): e23287  http://dx.doi.org/10.1371/journal.pone.0023287
168. Oliveira, L. M. A., Lages, A., Gomes, R. A., Neves, H., Familia, C., Coelho, A. V., and Quintas, A. (2011) Insulin glycation by methylglyoxal results in native-like aggregation and inhibition of fibril formation, BMC Biochemistry 12, ART41  http://dx.doi.org/10.1186/1471-2091-12-41
169. Paiva, J. A. P., Prat, E., Vautrin, S., Santos, M. D., San-Clemente, H., Brommonschenkel, S., Fonseca, P. G. S., Grattapaglia, D., Song, X. A., Ammiraju, J. S. S., Kudrna, D., Wing, R. A., Freitas, A. T., Berges, H., and Grima-Pettenati, J. (2011) Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries, BMC Genomics 12, ART137  http://dx.doi.org/10.1186/1471-2164-12-137
170. Paulo, A. C., Sampaio, A., Santos, N. C., Costa, P. S., Cunha, P., Zihl, J., Cerqueira, J., Palha, J. A., and Sousa, N. (2011) Patterns of cognitive performance in healthy ageing in northern Portugal: a cross-sectional analysis, PLoS ONE 6(9): e24553  http://dx.doi.org/10.1371/journal.pone.0024553
171. Pensado, A. S., Gomes, M. F. C., Lopes, J. N. C., Malfreyt, P., and Padua, A. A. H. (2011) Effect of alkyl chain length and hydroxyl group functionalization on the surface properties of imidazolium ionic liquids, Physical Chemistry Chemical Physics 13(30): 13518-13526 http://dx.doi.org/10.1039/c1cp20563c
172. Pereira, A. L., Martins, M., Oliveira, M. M., and Carrapico, F. (2011) Morphological and genetic diversity of the family Azollaceae inferred from vegetative characters and RAPD markers, Plant Systematics and Evolution 297(3-4): 213-226 http://dx.doi.org/10.1007/s00606-011-0509-0
173. Pereira, C. S., Ribeiro, J. M. L., Vatulescu, A. D., Findlay, K., MacDougall, A. J., and Jackson, P. A. P. (2011) Extensin network formation in Vitis vinifera callus cells is an essential and causal event in rapid and H(2)O(2)-induced reduction in primary cell wall hydration, BMC Plant Biology 11, ART106  http://dx.doi.org/10.1186/1471-2229-11-106
174. Pereiro, A. B., Rodriguez, A., Blesic, M., Shimizu, K., Lopes, J. N. C., and Rebelo, L. P. N. (2011) Mixtures of pyridine and nicotine with Pyridinium-based ionic liquids, Journal of Chemical and Engineering Data 56(12): 4356-4363 http://dx.doi.org/10.1021/je2001446
175. Petkovic, M., Seddon, K. R., Rebelo, L. P. N., and Pereira, C. S. (2011) Ionic liquids: a pathway to environmental acceptability, Chemical Society Reviews 40(3): 1383-1403 http://dx.doi.org/10.1039/c004968a
176. Pinheiro, C., Antonio, C., Ortuno, M. F., Dobrev, P. I., Hartung, W., Thomas-Oates, J., Ricardo, C. P., Vankova, R., Chaves, M. M., and Wilson, J. C. (2011) Initial water deficit effects on Lupinus albus photosynthetic performance, carbon metabolism, and hormonal balance: metabolic reorganization prior to early stress responses, Journal of Experimental Botany 62(14): 4965-4974 http://dx.doi.org/10.1093/jxb/err194
177. Pinheiro, C., and Chaves, M. M. (2011) Photosynthesis and drought: can we make metabolic connections from available data?, Journal of Experimental Botany 62(3): 869-882 http://dx.doi.org/10.1093/jxb/erq340
178. Pinho, F. G., Pinto, A. F., Pinto, L. C., Huber, H., Romao, C. V., Teixeira, M., Matias, P. M., and Bandeiras, T. M. (2011) Superoxide reductase from Nanoarchaeum equitans: expression, purification, crystallization and preliminary x-ray crystallographic analysis, Acta Crystallographica Section F-Structural Biology and Crystallization Communications 67(5): 591-595 http://dx.doi.org/10.1107/s1744309111009432
179. Pinto, A. F., Todorovic, S., Hildebrandt, P., Yamazaki, M., Amano, F., Igimi, S., Romao, C. V., and Teixeira, M. (2011) Desulforubrerythrin from Campylobacter jejuni, a novel multidomain protein, Journal of Biological Inorganic Chemistry 16(3): 501-510 http://dx.doi.org/10.1007/s00775-010-0749-4
180. Pinto, R. M., Dias, A. A., Costa, M. L., Rodrigues, P., Barros, M. T., Ogden, J. S., and Dyke, J. M. (2011) Thermal decomposition of methyl 2-azidopropionate studied by UV photoelectron spectroscopy and matrix isolation IR spectroscopy: heterocyclic intermediate vs imine formation, Journal of Physical Chemistry A 115(30): 8447-8457 http://dx.doi.org/10.1021/jp2036845
181. Puerto, M., Campos, A., Prieto, A., Camean, A., de Almeida, A. M., Coelho, A. V., and Vasconcelos, V. (2011) Differential protein expression in two bivalve species; Mytilus galloprovincialis and Corbicula fluminea; exposed to Cylindrospermopsis raciborskii cells, Aquatic Toxicology 101(1): 109-116 http://dx.doi.org/10.1016/j.aquatox.2010.09.009
182. Qian, Y. F., Paquete, C. M., Louro, R. O., Ross, D. E., LaBelle, E., Bond, D. R., and Tien, M. (2011) Mapping the iron binding site(s) on the small tetraheme cytochrome of S hewanella oneidensis MR-1, Biochemistry 50(28): 6217-6224 http://dx.doi.org/10.1021/bi2005015
183. Queiroga, C. S. F., Almeida, A. S., Alves, P. M., Brenner, C., and Vieira, H. L. A. (2011) Carbon monoxide prevents hepatic mitochondrial membrane permeabilization, BMC Cell Biology 12, ART10 http://dx.doi.org/10.1186/1471-2121-12-10
184. Quintal, S., Fedi, S., Barbetti, J., Pinto, P., Felix, V., Drew, M. G. B., Zanello, P., and Calhorda, M. J. (2011) Synthesis and properties of new Mo(II) complexes with N-heterocyclic and ferrocenyl ligands, Journal of Organometallic Chemistry 696(10): 2142-2152 http://dx.doi.org/10.1016/j.jorganchem.2010.11.024
185. Quintas, P. O., Catarino, T., Todorovic, S., and Turner, D. L. (2011) Highly selective ligand binding by Methylophilus methylotrophus cytochrome c '', Biochemistry 50(25): 5624-5632 http://dx.doi.org/10.1021/bi200480a
186. Rabie, M. A., Elsaidy, S., El-Badawy, A. A., Siliha, H., and Malcata, F. X. (2011) Biogenic amine contents in selected Egyptian fermentedf foods as determined by ion-exchange chromatography, Journal of Food Protection 74(4): 681-685 http://dx.doi.org/10.4315/0362-028x.jfp-10-257
187. Rabie, M. A., Siliha, H., el-Saidy, S., el-Badawy, A. A., and Malcata, F. X. (2011) Reduced biogenic amine contents in sauerkraut via addition of selected lactic acid bacteria, Food Chemistry 129(4): 1778-1782 http://dx.doi.org/10.1016/j.foodchem.2011.05.106
188. Rabie, M. A., Siliha, H. I., El-Saidy, S. M., El-Badawy, A. A., and Malcata, F. X. (2011) Effect of gamma-irradiation upon biogenic amine formation in blue cheese during storage, International Dairy Journal 21(5): 373-376 http://dx.doi.org/10.1016/j.idairyj.2010.11.009
189. Real, G., Monteiro, F., Burger, C., and Alves, P. M. (2011) Improvement of lentiviral transfer vectors using cis-acting regulatory elements for increased gene expression, Applied Microbiology and Biotechnology 91(6): 1581-1591 http://dx.doi.org/10.1007/s00253-011-3392-2
190. Reed, P., Veiga, H., Jorge, A. M., Terrak, M., and Pinho, M. G. (2011) Monofunctional transglycosylases are not essential for Staphylococcus aureus cell wall synthesis, Journal of Bacteriology 193(10): 2549-2556 http://dx.doi.org/10.1128/jb.01474-10
191. Reinstein, O., Neves, M. A. D., Saad, M., Boodram, S. N., Lombardo, S., Beckham, S. A., Brouwer, J., Audette, G. F., Groves, P., Wilce, M. C. J., and Johnson, P. E. (2011) Engineering a structure switching mechanism into a steroid-binding aptamer and hydrodynamic analysis of the ligand binding mechanism, Biochemistry 50(43): 9368-9376 http://dx.doi.org/10.1021/bi201361v
192. Reis, P. J. M., and Malcata, F. X. (2011) Ripening-related changes in Serra da Estrela cheese: a stereological study, Journal of Dairy Science 94(3): 1223-1238 http://dx.doi.org/10.3168/jds.2010-3416
193. Reis, P. M., Gamelas, C. A., Brito, J. A., Saffon, N., Gomez, M., and Royo, B. (2011) Chiral cationic Cp ' Mo(CO)(2)(NCMe) (+) species - catalyst precursors for olefin epoxidation with H2O2 and tert-butyl hydroperoxide, European Journal of Inorganic Chemistry 2011(5): 666-673 http://dx.doi.org/10.1002/ejic.201001065
194. Ribeiro, T., Santos, S., Marques, M. I. M., Gilmore, M., and Lopes, M. D. S. (2011) Identification of a new gene, vanV, in vanB operons of Enterococcus faecalis, International Journal of Antimicrobial Agents 37(6): 554-557 http://dx.doi.org/10.1016/j.ijantimicag.2011.01.024
195. Ribeiro-Silva, C., Gilberto, S., Gomes, R. A., Mateus, E., Monteiro, E., Barroso, E., Coelho, A. V., da Costa, G., Freire, A. P., and Cordeiro, C. (2011) The relative amounts of plasma transthyretin forms in familial transthyretin amyloidosis: a quantitative analysis by Fourier transform ion-cyclotron resonance mass spectrometry, Amyloid-Journal of Protein Folding Disorders 18(4): 191-199 http://dx.doi.org/10.3109/13506129.2011.614295
196. Ricardo, C. P. P., Martins, I., Francisco, R., Sergeant, K., Pinheiro, C., Campos, A., Renaut, J., and Fevereiro, P. (2011) Proteins associated with cork formation in Quercus suber L. stem tissues, Journal of Proteomics 74(8): 1266-1278 http://dx.doi.org/10.1016/j.jprot.2011.02.003
197. Rigottier-Gois, L., Alberti, A., Houel, A., Taly, J. F., Palcy, P., Manson, J., Pinto, D., Matos, R. C., Carrilero, L., Montero, N., Tariq, M., Karsens, H., Repp, C., Kropec, A., Budin-Verneuil, A., Benachour, A., Sauvageot, N., Bizzini, A., Gilmore, M. S., Bessieres, P., Kok, J., Huebner, J., Lopes, F., Gonzalez-Zorn, B., Hartke, A., and Serror, P. (2011) Large-scale screening of a targeted Enterococcus faecalis mutant library identifies envelope fitness factors, PLoS ONE 6(12): e29023  http://dx.doi.org/10.1371/journal.pone.0029023
198. Rocha, J., Popescu, A. O., Borges, P., Mil-Homens, D., Moreira, L. M., Sa-Correia, I., Fialho, A. M., and Frazao, C. (2011) Structure of Burkholderia cepacia UDP-glucose dehydrogenase (UGD) BceC and role of Tyr10 in final hydrolysis of UGD thioester intermediate, Journal of Bacteriology 193(15): 3978-3987 http://dx.doi.org/10.1128/jb.01076-10
199. Rocha, J. M., Kalo, P. J., and Malcata, F. X. (2011) Neutral lipids in free, bound, and starch lipid extracts of flours, sourdough, and Portuguese sourdough bread determined by NP-HPLC-ELSD, Cereal Chemistry 88(4): 400-408 http://dx.doi.org/10.1094/cchem-11-10-0157
200. Rocha, M. A. A., Lima, C., Gomes, L. R., Schroder, B., Coutinho, J. A. P., Marrucho, I. M., Esperanca, J. M. S. S., Rebelo, L. P. N., Shimizu, K., Lopes, J. N. C., and Santos, L. M. N. B. F. (2011) High-accuracy vapor pressure data of the extended C(n)C(1)im Ntf(2) ionic liquid series: trend changes and structural shifts, Journal of Physical Chemistry B 115(37): 10919-10926 http://dx.doi.org/10.1021/jp2049316
201. Rodrigues, A. F., Guerreiro, M. R., Santiago, V. M., Dalba, C., Klatzmann, D., Alves, P. M., Carrondo, M. J. T., and Coroadinha, A. S. (2011) Down-regulation of CD81 tetraspanin in human cells producing retroviral-based particles: tailoring vector composition, Biotechnology and Bioengineering 108(11): 2623-2633 http://dx.doi.org/10.1002/bit.23231
202. Rodrigues, C. A. B., de Matos, M. N., Guerreiro, B. M. H., Goncalves, A. M. L., Romao, C. C., and Afonso, C. A. M. (2011) Water as efficient medium for mild decarbonylation of tertiary aldehydes, Tetrahedron Letters 52(22): 2803-2807 http://dx.doi.org/10.1016/j.tetlet.2011.03.012
203. Rodrigues, D., Rocha-Santos, T. A. P., Pereira, C. I., Gomes, A. M., Malcata, F. X., and Freitas, A. C. (2011) The potential effect of FOS and inulin upon probiotic bacterium performance in curdled milk matrices, Lwt-Food Science and Technology 44(1): 100-108 http://dx.doi.org/10.1016/j.lwt.2010.05.021
204. Rodrigues, J. V., Prosinecki, V., Marrucho, I., Rebelo, L. P. N., and Gomes, C. M. (2011) Protein stability in an ionic liquid milieu: on the use of differential scanning fluorimetry, Physical Chemistry Chemical Physics 13(30): 13614-13616 http://dx.doi.org/10.1039/c1cp21187k
205. Roldao, A., Vicente, T., Peixoto, C., Carrondo, M. J. T., and Alves, P. M. (2011) Quality control and analytical methods for baculovirus-based products, Journal of Invertebrate Pathology 107(suppl): S94-S105 http://dx.doi.org/10.1016/j.jip.2011.05.009
206. Romao, C. V., Ladakis, D., Lobo, S. A. L., Carrondo, M. A., Brindley, A. A., Deery, E., Matias, P. M., Pickersgill, R. W., Saraiva, L. M., and Warren, M. J. (2011) Evolution in a family of chelatases facilitated by the introduction of active site asymmetry and protein oligomerization, Proceedings of the National Academy of Sciences of the United States of America 108(1): 97-102 http://dx.doi.org/10.1073/pnas.1014298108
207. Sa-Leao, R., Pinto, F., Aguiar, S., Nunes, S., Carrico, J. A., Frazao, N., Goncalves-Sousa, N., Melo-Cristino, J., de Lencastre, H., and Ramirez, M. (2011) Analysis of invasiveness of Pneumococcal serotypes and clones circulating in Portugal before widespread use of conjugate vaccines reveals heterogeneous behavior of clones expressing the same serotype, Journal of Clinical Microbiology 49(4): 1369-1375 http://dx.doi.org/10.1128/jcm.01763-10
208. Sanches, S., Leitao, C., Penetra, A., Cardoso, V. V., Ferreira, E., Benoliel, M. J., Crespo, M. T. B., and Pereira, V. J. (2011) Direct photolysis of polycyclic aromatic hydrocarbons in drinking water sources, Journal of Hazardous Materials 192(3): 1458-1465 http://dx.doi.org/10.1016/j.jhazmat.2011.06.065
209. Sanches, S., Penetra, A., Granado, C., Cardoso, V. V., Ferreira, E., Benoliel, M. J., Crespo, M. T. B., Pereira, V. J., and Crespo, J. G. (2011) Removal of pesticides and polycyclic aromatic hydrocarbons from different drinking water sources by nanofiltration, Desalination and Water Treatment 27(1-3): 141-149 http://dx.doi.org/10.5004/dwt.2011.2087
210. Sand, M., de Berardinis, V., Mingote, A., Santos, H., Gottig, S., Muller, V., and Averhoff, B. (2011) Salt adaptation in Acinetobacter baylyi: identification and characterization of a secondary glycine betaine transporter, Archives of Microbiology 193(10): 723-730 http://dx.doi.org/10.1007/s00203-011-0713-x
211. Santos, A. P., Ferreira, L., Maroco, J., and Oliveira, M. M. (2011) Abiotic stress and induced DNA hypomethylation cause interphase chromatin structural changes in rice rDNA Loci, Cytogenetic and Genome Research 132(4): 297-303 http://dx.doi.org/10.1159/000322287
212. Santos, A. P., Serra, T., Figueiredo, D. D., Barros, P., Lourenco, T., Chander, S., Oliveira, M. M., and Saibo, N. J. M. (2011) Transcription regulation of abiotic stress responses in rice: a combined action of transcription factors and epigenetic mechanisms, Omics-a Journal of Integrative Biology 15(12): 839-857 http://dx.doi.org/10.1089/omi.2011.0095
213. Santos, S. S., Sonnewald, U., Carrondo, M. J. T., and Alves, P. M. (2011) The role of glia in neuronal recovery following anoxia: in vitro evidence of neuronal adaptation, Neurochemistry International 58(6): 665-675 http://dx.doi.org/10.1016/j.neuint.2011.02.005
214. Santos-Silva, T., Mukhopadhyay, A., Seixas, J. D., Bernardes, G. J. L., Romao, C. C., and Romao, M. J. (2011) Towards improved therapeutic CORMs: understanding the reactivity of CORM-3 with proteins, Current Medicinal Chemistry 18(22): 3361-3366 http://dx.doi.org/10.2174/092986711796504583
215. Santos-Silva, T., Mukhopadhyay, A., Seixas, J. D., Bernardes, G. J. L., Romao, C. C., and Romao, M. J. (2011) CORM-3 reactivity toward proteins: the crystal structure of a Ru(II) dicarbonyl-lysozyme complex, Journal of the American Chemical Society 133(5): 1192-1195 http://dx.doi.org/10.1021/ja108820s
216. Schroder, B., Freire, M. G., Varanda, F. R., Marrucho, I. M., Santos, L. M. N. B. F., and Coutinho, J. A. P. (2011) Aqueous solubility, effects of salts on aqueous solubility, and partitioning behavior of hexafluorobenzene: experimental results and COSMO-RS predictions, Chemosphere 84(4): 415-422 http://dx.doi.org/10.1016/j.chemosphere.2011.03.055
217. Schroeder, N., Mota, L. J., and Meresse, S. (2011) Salmonella-induced tubular networks, Trends in Microbiology 19(6): 268-277 http://dx.doi.org/10.1016/j.tim.2011.01.006
218. Serra, A. T., Duarte, R. O., Bronze, M. R., and Duarte, C. M. M. (2011) Identification of bioactive response in traditional cherries from Portugal, Food Chemistry 125(2): 318-325 http://dx.doi.org/10.1016/j.foodchem.2010.07.088
219. Serra, A. T., Matias, A. A., Almeida, A. P. C., Bronze, M. R., Alves, P. M., de Sousa, H. C., and Duarte, C. M. M. (2011) Processing cherries ( Prunus avium) using supercritical fluid technology. Part 2. Evaluation of SCF extracts as promising natural chemotherapeutical agents, Journal of Supercritical Fluids 55(3) 1007-1013 http://dx.doi.org/10.1016/j.supflu.2010.06.006
220. Serra, M., Correia, C., Malpique, R., Brito, C., Jensen, J., Bjorquist, P., Carrondo, M. J. T., and Alves, P. M. (2011) Microencapsulation technology: a powerful tool for integrating expansion and cryopreservation of human embryonic stem cells, PLoS ONE 6(8): e23212  http://dx.doi.org/10.1371/journal.pone.0023212
221. Serrano, M., Real, G., Santos, J., Carneiro, J., Moran, C. P., and Henriques, A. O. (2011) A negative feedback loop that limits the ectopic activation of a cell type-specific sporulation sigma factor of Bacillus subtilis, PLoS Genetics 7(9): e1002220  http://dx.doi.org/10.1371/journal.pgen.1002220
222. Shvaleva, A., Lobo-do-Vale, R., Cruz, C., Castaldi, S., Rosa, A. P., Chaves, M. M., and Pereira, J. S. (2011) Soil-atmosphere greenhouse gases (CO(2): CH(4) and N(2)O) exchange in evergreen oak woodland in southern Portugal, Plant Soil and Environment 57(10): 471-477
223. Silva, A. C., Carrondo, M. J. T., and Alves, P. M. (2011) Strategies for improved stability of Peste des Petits Ruminants Vaccine, Vaccine 29(31): 4983-4991 http://dx.doi.org/10.1016/j.vaccine.2011.04.102
224. Silva I. J., Saramago M., Dressaire C., Domingues S., Viegas S. C. and Arraiano C. M. (2011) Importance and key events of prokaryotic RNA decay: the ultimate fate of an RNA molecule, Wiley Interdisciplinary Reviews: RNA 2(6): 818-836. http://dx.doi.org/10.1002/wrna.94
225. Silva, M. G., Ueti, M. W., Norimine, J., Florin-Christensen, M., Bastos, R. G., Goff, W. L., Brown, W. C., Oliva, A., and Suarez, C. E. (2011) Babesia bovis expresses Bbo-6cys-E, a member of a novel gene family that is homologous to the 6-cys family of Plasmodium, Parasitology International 60(1): 13-18 http://dx.doi.org/10.1016/j.parint.2010.09.004
226. Silva, S., Frazao, O., Viegas, J., Ferreira, L. A., Araujo, F. M., Malcata, F. X., and Santos, J. L. (2011) Temperature and strain-independent curvature sensor based on a singlemode/multimode fiber optic structure, Measurement Science & Technology 22(8): ART085201 http://dx.doi.org/10.1088/0957-0233/22/8/085201
227. Silva, S., Santos, J. L., Malcata, F. X., Kobelke, J., Schuster, K., and Frazao, O. (2011) Optical refractometer based on large-core air-clad photonic crystal fibers, Optics Letters 36(6): 852-854 10.1364/OL.36.000852
228. da Silva, S. M., Pimentel, C., Valente, F. M. A., Rodrigues-Pousada, C., and Pereira, I. A. C. (2011) Tungsten and molybdenum regulation of formate dehydrogenase expression in Desulfovibrio vulgaris Hildenborough, Journal of Bacteriology 193(12): 2909-2916 http://dx.doi.org/10.1128/jb.00042-11
229. Silva, T., Reto, M., Sol, M., Peito, A., Peres, C. M., Peres, C., and Malcata, F. X. (2011) Characterization of yeasts from Portuguese brined olives, with a focus on their potentially probiotic behavior, Lwt-Food Science and Technology 44(6): 1349-1354 http://dx.doi.org/10.1016/j.lwt.2011.01.029
230. Simoes, A. S., Pereira, L., Nunes, S., Brito-Avo, A., de Lencastre, H., and Sa-Leao, R. (2011) Clonal evolution leading to maintenance of antibiotic resistance rates among colonizing Pneumococci in the PCV7 era in Portugal, Journal of Clinical Microbiology 49(8): 2810-2817 http://dx.doi.org/10.1128/jcm.00517-11
231. Simoes, A. S., Valente, C., de Lencastre, H., and Sa-Leao, R. (2011) Rapid identification of noncapsulated Streptococcus pneumoniae in nasopharyngeal samples allowing detection of co-colonization and reevaluation of prevalence, Diagnostic Microbiology and Infectious Disease 71(3): 208-216 http://dx.doi.org/10.1016/j.diagmicrobio.2011.07.009
232. Simoes, R. R., Aires-de-Sousa, M., Conceicao, T., Antunes, F., da Costa, P. M., and de Lencastre, H. (2011) High prevalence of EMRSA-15 in Portuguese public buses: a worrisome finding, PLoS ONE 6(3): e17630 http://dx.doi.org/10.1371/journal.pone.0017630
233. Soares, N. C., Wojtkowska, J., and Jackson, P. A. (2011) A proteomic analysis of the wound response in Medicago leaves reveals the early activation of a ROS-sensitive signal pathway, Journal of Proteomics 74(8): 1411-1420 http://dx.doi.org/10.1016/j.jprot.2011.03.017
234. Sousa, F. L., Alves, R. J., Pereira-Leal, J. B., Teixeira, M., and Pereira, M. M. (2011) A bioinformatics classifier and database for heme-copper oxygen reductases, PLoS ONE 6(4): e19117 http://dx.doi.org/10.1371/journal.pone.0019117
235. Sousa, P. M. F., Silva, S. T. N., Hood, B. L., Charro, N., Carita, J. N., Vaz, F., Penque, D., Conrads, T. P., and Melo, A. M. P. (2011) Supramolecular organizations in the aerobic respiratory chain of Escherichia coli, Biochimie 93(3): 418-425 http://dx.doi.org/10.1016/j.biochi.2010.10.014
236. Souza, S. L., Hallock, K. J., Funari, S. S., Vaz, W. L. C., Hamilton, J. A., and Melo, E. (2011) Study of the miscibility of cholesteryl oleate in a matrix of ceramide, cholesterol and fatty acid, Chemistry and Physics of Lipids 164(7): 664-671 http://dx.doi.org/10.1016/j.chemphyslip.2011.06.011
237. Souza, S. L., Valerio, J., Funari, S. S., and Melo, E. (2011) The thermotropism and prototropism of ternary mixtures of ceramide C16, cholesterol and palmitic acid. An exploratory study, Chemistry and Physics of Lipids 164(7): 643-653 http://dx.doi.org/10.1016/j.chemphyslip.2011.06.009
238. Tariq, M., Carvalho, P. J., Coutinho, J. A. P., Marrucho, I. M., Lopes, J. N. C., and Rebelo, L. P. N. (2011) Viscosity of (C-2-C-14) 1-alkyl-3-methylimidazolium bis(trifluoromethylsulfonyl)amide ionic liquids in an extended temperature range, Fluid Phase Equilibria 301(1): 22-32 http://dx.doi.org/10.1016/j.fluid.2010.10.018
239. Tariq, M., Podgorsek, A., Ferguson, J. L., Lopes, A., Gomes, M. F. C., Padua, A. A. H., Rebelo, L. P. N., and Lopes, J. N. C. (2011) Characteristics of aggregation in aqueous solutions of dialkylpyrrolidinium bromides, Journal of Colloid and Interface Science 360(2): 606-616 http://dx.doi.org/10.1016/j.jcis.2011.04.083
240. Tariq, M., Serro, A. P., Colaco, R., Saramago, B., Lopes, J. N. C., and Rebelo, L. P. N. (2011) Effect of alkyl chain length on the adsorption and frictional behaviour of 1-alkyl-3-methylimidazolium chloride ionic liquid surfactants on gold surfaces, Colloids and Surfaces A-Physicochemical and Engineering Aspects 377(1-3): 361-366 http://dx.doi.org/10.1016/j.colsurfa.2011.01.036
241. Tavares, A. F. N., Teixeira, M., Romao, C. C., Seixas, J. D., Nobre, L. S., and Saraiva, L. M. (2011) Reactive oxygen species mediate bactericidal killing elicited by carbon monoxide-releasing molecules, Journal of Biological Chemistry 286(30): 26708-26717 http://dx.doi.org/10.1074/jbc.M111.255752
242. Tavares, T., Contreras, M. D., Amorim, M., Pintado, M., Recio, I., and Malcata, F. X. (2011) Novel whey-derived peptides with inhibitory effect against angiotensin-converting enzyme: in vitro effect and stability to gastrointestinal enzymes, Peptides 32(5): 1013-1019 http://dx.doi.org/10.1016/j.peptides.2011.02.005
243. Tavares, T. G., Contreras, M. M., Amorim, M., Martin-Alvarez, P. J., Pintado, M. E., Recio, I., and Malcata, F. X. (2011) Optimisation, by response surface methodology, of degree of hydrolysis and antioxidant and ACE-inhibitory activities of whey protein hydrolysates obtained with cardoon extract, International Dairy Journal 21(12): 926-933 http://dx.doi.org/10.1016/j.idairyj.2011.05.013
244. Tavares, T. G., Monteiro, K. M., Possenti, A., Pintado, M. E., Carvalho, J. E., and Malcata, F. X. (2011) Antiulcerogenic activity of peptide concentrates obtained from hydrolysis of whey proteins by proteases from Cynara cardunculus, International Dairy Journal 21(12): 934-939 http://dx.doi.org/10.1016/j.idairyj.2011.06.004
245. Teixeira, A. P., Dias, J. M. L., Carinhas, N., Sousa, M., Clemente, J. J., Cunha, A. E., von Stosch, M., Alves, P. M., Carrondo, M. J. T., and Oliveira, R. (2011) Cell functional enviromics: unravelling the function of environmental factors, BMC Systems Biology 5, ART92  http://dx.doi.org/10.1186/1752-0509-5-92
246. Teixeira, A. P., Duarte, T. M., Carrondo, M. J. T., and Alves, P. M. (2011) Synchronous fluorescence spectroscopy as a novel tool to enable PAT applications in bioprocesses, Biotechnology and Bioengineering 108(8): 1852-1861 http://dx.doi.org/10.1002/bit.23131
247. Teixeira, A. P., Duarte, T. M., Oliveira, R., Carrondo, M. J. T., and Alves, P. M. (2011) High-throughput analysis of animal cell cultures using two-dimensional fluorometry, Journal of Biotechnology 151(3): 255-260 http://dx.doi.org/10.1016/j.jbiotec.2010.11.015
248. Testa, F., Mastronicola, D., Cabelli, D. E., Bordi, E., Pucillo, L. P., Sarti, P., Saraiva, L. M., Giuffre, A., and Teixeira, M. (2011) The superoxide reductase from the early diverging eukaryote Giardia intestinalis, Free Radical Biology and Medicine 51(8): 1567-1574 http://dx.doi.org/10.1016/j.freeradbiomed.2011.07.017
249. Tome, L. C., Freire, M. G., Rebelo, L. P. N., Silvestre, A. J. D., Neto, C. P., Marrucho, I. M., and Freire, C. S. R. (2011) Surface hydrophobization of bacterial and vegetable cellulose fibers using ionic liquids as solvent media and catalysts, Green Chemistry 13(9): 2464-2470 http://dx.doi.org/10.1039/c1gc15432j
250. Tome, L. C., Goncalves, C. M. B., Boaventura, M., Brandao, L., Mendes, A. M., Silvestre, A. J. D., Neto, C. P., Gandini, A., Freire, C. S. R., and Marrucho, I. M. (2011) Preparation and evaluation of the barrier properties of cellophane membranes modified with fatty acids, Carbohydrate Polymers 83(2): 836-842 http://dx.doi.org/10.1016/j.carbpol.2010.08.060
251. Torres, V. M., Posa, M., Srdjenovic, B., and Simplicio, A. L. (2011) Solubilization of fullerene C-60 in micellar solutions of different solubilizers, Colloids and Surfaces B-Biointerfaces 82(1): 46-53 http://dx.doi.org/10.1016/j.colsurfb.2010.08.012
252. Tostoes, R. M., Leite, S. B., Miranda, J. P., Sousa, M., Wang, D. I. C., Carrondo, M. J. T., and Alves, P. M. (2011) Perfusion of 3D encapsulated hepatocytes-a synergistic effect enhancing long-term functionality in bioreactors, Biotechnology and Bioengineering 108(1): 41-49 http://dx.doi.org/10.1002/bit.22920
253. Varanda, C., Felix, M. D., Soares, C. M., Oliveira, S., and Clara, M. I. (2011) Specific amino acids of Olive mild mosaic virus coat protein are involved in transmission by Olpidium brassicae, Journal of General Virology 92(9): 2209-2213 http://dx.doi.org/10.1099/vir.0.032284-0
254. Vaz, M., Maroco, J., Ribeiro, N., Gazarini, L. C., Pereira, J. S., and Chaves, M. M. (2011) Leaf-level responses to light in two co-occurring Quercus ( Quercus ilex and Quercus suber): leaf structure, chemical composition and photosynthesis, Agroforestry Systems 82(2): 173-181 http://dx.doi.org/10.1007/s10457-010-9343-6
255. Veiga, H., Jorge, A. M., and Pinho, M. G. (2011) Absence of nucleoid occlusion effector Noc impairs formation of orthogonal FtsZ rings during Staphylococcus aureus cell division, Molecular Microbiology 80(5): 1366-1380 http://dx.doi.org/10.1111/j.1365-2958.2011.07651.x
256. Veiros, L. F., Gamelas, C. A., Calhorda, M. J., and Romao, C. C. (2011) Chemoselective sulfide and sulfoxide oxidations by CpMo(CO)(3)Cl/HOOR: a DFT mechanistic study, Organometallics 30(6): 1454-1465 http://dx.doi.org/10.1021/om101044f
257. Venceslau, S. S., Matos, D., and Pereira, I. A. C. (2011) EPR characterization of the new Qrc complex from sulfate reducing bacteria and its ability to form a supercomplex with hydrogenase and TpIc(3), FEBS Letters 585(14): 2177-2181 http://dx.doi.org/10.1016/j.febslet.2011.05.054
258. Vicente, T., Fabar, R., Alves, P. M., Carrondo, M. J. T., and Mota, J. P. B. (2011) Impact of ligand density on the optimization of ion-exchange membrane chromatography for viral vector purification, Biotechnology and Bioengineering 108(6): 1347-1359 http://dx.doi.org/10.1002/bit.23058
259. Vicente, T., Mota, J. P. B., Peixoto, C., Alves, P. M., and Carrondo, M. J. T. (2011) Rational design and optimization of downstream processes of virus particles for biopharmaceutical applications: current advances, Biotechnology Advances 29(6): 869-878 http://dx.doi.org/10.1016/j.biotechadv.2011.07.004
260. Vicente, T., Roldao, A., Peixoto, C., Carrondo, M. J. T., and Alves, P. M. (2011) Large-scale production and purification of VLP-based vaccines, Journal of Invertebrate Pathology 107(suppl.): S42-S48 http://dx.doi.org/10.1016/j.jip.2011.05.004
261. Viegas, S. C., Silva, I. J., Saramago, M., Domingues, S., and Arraiano, C. M. (2011) Regulation of the small regulatory RNA MicA by ribonuclease III: a target-dependent pathway, Nucleic Acids Research 39(7): 2918-2930 http://dx.doi.org/10.1093/nar/gkq1239
262. Vieira, H. L. A., Alves, P. M., and Vercelli, A. (2011) Modulation of neuronal stem cell differentiation by hypoxia and reactive oxygen species, Progress in Neurobiology 93(3): 444-455 http://dx.doi.org/10.1016/j.pneurobio.2011.01.007

263. Yanez, F., Martikainen, L., Braga, M. E. M., Alvarez-Lorenzo, C., Concheiro, A., Duarte, C. M. M., Gil, M. H., and de Sousa, H. C. (2011) Supercritical fluid-assisted preparation of imprinted contact lenses for drug delivery, Acta Biomaterialia 7(3): 1019-1030 http://dx.doi.org/10.1016/j.actbio.2010.10.003

Articles not indexed in ISI

1. Braga M. E. M., Costa V. P., Pereira M. J. T., Fiadeiro P. T., Gomes A.P. A. R., Duarte C. M. M. and de Sousa H. C. (2011)Effects of operational conditions on the supercritical solvent impregnation of acetazolamide in Balafilcon A commercial contact lenses, International Journal of Pharmaceutics 420(2): 231-243
2. Brito, J. A., Saffon, N., Gomez, M., and Royo, B. (2011)cis-dioxomolybdenum(VI) complexes containing chiral ligands: synthesis and catalytic application in olefin epoxidation, Current Inorganic Chemistry 1(2): 131-139 http://dx.doi.org/10.2174/1877945X11101020131
3. Delgado, A., Catulo, L., Peres, C. M., and Peres, C. (2011) Azeitona de mesa em Portugal, valor nutricional e perspectivas para novas utilizações, Actas Portuguesas de Horticultura 14: 109-119
4. Lopes J. N. C. and Rebelo L. P. N. (2001) Ionic liquids and reactive azeotropes: the continuity of the aprotic and protic classes and their relation to molten salts, Molten Salts & Ionic Liquids 2011-Fray International Symposium 3: 559-563
5. Oliveira, T. F., Franklin, E., Afonso, J. P., Khan, A. R.,Oldham, N. J., Pereira, I. A. C., and Archer, M. (2011) Structural insights into dissimilatory sulfite reductases: Structure of desulforubidin from Desulfomicrobium norvegicum, Frontiers in Microbiology 2 http://dx.doi.org/10.3389/fmicb.2011.00071
6. Pereira, I. A. C., Ramos, A. R., Grein, F., Marques, M. C., Da Silva, S. M., and Venceslau, S. S. (2011) A comparative genomic analysis of energy metabolism in sulfate reducing bacteria and archaea, Frontiers in Microbiology 2 http://dx.doi.org/10.3389/fmicb.2011.00069
7. Peres, C. M., Alves, M., Catulo, L., Hérnandez, A., and Peres, C. (2011) Inovação em produtos tradicionais – azeitona de mesa no caminho para a produção de um produto probiótico, Revista da APH 107: 36-38
8. Pinto, M. P., Santos, C. N., Henriques, C., Lima, G., and Quedas, F. (2011) Lycopene content and antioxidant capacity of Portuguese watermelon fruits, Electronic Journal of Environmental, Agricultural and Food Chemistry 10, 2090-2097
9. Sanches, S., Barreto Crespo, M. T., and Pereira, V. J. (2011) Fugacity in the environment and wastewater removal predictions of toxic xenobiotics, Global Journal of Environmental Science and Technology 1: 8
10. Tavares, L., Alves, P. M., Ferreira, R. B., and Santos, C. (2011) Comparison of different methods for DNA-free RNA isolation from SK-N-MC neuroblastoma, BMC Research Notes 4(1): 3 http://dx.doi.org/10.1186/1756-0500-1-140
11. Veith, A., Urich, T., Seyfarth, K., Protze, J., Frazao, C., and Kletzin, A. (2011) Substrate pathways and mechanisms of inhibition in the sulfur oxygenase reductase of Acidianus ambivalens, Frontiers in Microbiology 2 http://dx.doi.org/10.3389/fmicb.2011.00037

     

     

Book Chapters

1. Amaro, H. M., and Malcata, F. X. (2011) Carotenoids from microalgae and cyanobacteria: features, production and applications, In Carotenoids: properties, effects and diseases (Yamaguchi, M., Ed.), Nova Science Publishers, Hauppauge, NY, USA
2. Bento, I., Louro, R. O., Soares, C. M., and Carrondo, M. A. (2011) Tetraheme cytochromes C₃, In Encyclopedia of Inorganic and Bioinorganic Chemistry, John Wiley & Sons, Ltd.http://dx.doi.org/10.1002/9781119951438.eibc0644
3. Campos, A., Almeida, A. M., and Coelho, A. (2011) Blue native PAGE, basis of the technique and its use in organelle study: the mitochondrial complexome, In Mitochondria: structure,functions and dysfunctions (Svensson, L., Ed.), pp 975-982,Nova Science Publishers, Haupagge, NY, USA
4. Chaves, M. M., Costa, J. M., and Saibo, N. (2011) Recent advances in photosynthesis under drought and salinity, In Plant responses to drought and salinity stress: developments in a post-genomic era (Turkan, I., Ed.), pp 49-104, Academic Press Ltd-Elsevier Science Ltd, London.http://dx.doi.org/10.1016/b978-0-12-387692-8.00003-5
5. Coelho, L., Silva, S. F. O., Tafulo, P. A. R., Santos, J. L.,Frazao, O., and Malcata, F. X. (2011) Optical fibre hydrogen sensors based on palladium coatings, In International Conference on Applications of Optics and Photonics (Costa, M. F. M., Ed.),Spie-Int Soc Optical Engineering, Bellingham.http://dx.doi.org/10.1117/12.892014
6. Giao, M. S., Guedes, A. C., and Malcata, F. X. (2011)Antioxidants from wild plants: sources, features and assays, In Wild Plants: identification, uses and conservation (Davis, R. E., Ed.), pp 63-104, Nova Science Publishers, Hauppauge, NY, USA
7. Gonçalves V. L., Vicente J. B., Saraiva L. M. and Teixeira M.(2011)Flavodiiron proteins and their role in cyanobacteria. In G. A. Peschek et al. (Eds.), Bioenergetic processes of cyanobacteria: from evolutionary singularity to ecological diversity (pp. 631-653). Dordrecht: Springer Netherlands
8. Kongo, J. M., and Malcata, F. X. (2011) Azorean traditional cheesemaking: a case study pertaining to a unique food chain, In Food chains: new research (Jensen, M. A., and Muller, D. W., Eds.), pp 137-170, Nova Science Publishers, Hauppauge, NY, USA
9. Matos R. G., Pobre V., Reis F. P., Malecki M., Andrade J. M. and Arraiano C. M. (2011) Structure and Degradation Mechanisms of 3′ to 5′ Exoribonucleases, In Ribonucleases (A. W. Nicholson, Ed.), pp 193-222, Springer Berlin, Heidelberg (Nucleic Acids and Molecular Biology, 26) http://dx.doi.org/10.1007/978-3-642-21078-5_8
10. Neves, S. S., and Forrest, L. L. (2011) Plant DNA sequencing for phylogenetic analyses: from plants to sequences, In Network Biology (Cagney, G., and Emili, A., Eds.), pp 183-235, Humana Press.http://dx.doi.org/10.1007/978-1-61779-276-2_10
11. Neves, S. S. (2011) Eleusine, In Wild crop relatives: genomic and breeding resources (Kole, C., Ed.), pp 113-133, Springer Berlin Heidelberg, Heidelberg.http://dx.doi.org/10.1007/978-3-642-14255-0_7
12. Newton, A. C., Akar, T., Baresel, J. P., Bebeli, P. J., Bettencourt, E., Bladenopoulos, K. V., Czembor, J. H., Fasoula, D. A., Katsiotis, A., Koutis, K., Koutsika-Sotiriou, M., Kovacs, G., Larsson, H., Carvalho, M. A. A. P., Rubiales, D., Russell, J., Santos, T. M. M. d., and Patto, M. C. V. (2011) Cereal landraces for sustainable agriculture, In Sustainable agriculture (Lichtfouse, E., Hamelin, M., Navarrete, M., and Debaeke, P., Eds.), pp 147-186, Springer Netherlands, Dordrecht.http://dx.doi.org/10.1007/978-94-007-0394-0_10
13. Pereiro, A. B., and Rodriguez, A. (2011) Applications of ionic liquids in azeotropic mixtures separations, In Ionic liquids: applications and perspectives (Kokorin, A., Ed.), pp 225-242,InTech, [S.l]
14. Peres, C. (2011) As bactérias lácticas na produção de azeitona probiótica, In AGRORRURAL: contributos científicos (Instituto Nacional de Recursos Biológicos, I. P., and Imprensa Nacional-Casa da Moeda, S. A., Eds.), pp 82-91, Imprensa Nacional-Casa da Moeda, S.A., Lisboa
15. Pimentel, L. L., Crespo, M. T. B., and Malcata, F. X. (2011)Introduction: a journey to the world of enterococcus, In Enterococcus and safety  (Semedo-Lemsaddek, T., Crespo, M. T. B., and Tenreiro, R., Eds.), Nova Science Publishers, Hauppauge, NY, USA
16. Ramos, O. S., and Malcata, F. X. (2011) Edible and biodegradable packaging for food storage In Food storage (Cohen, G., and Levin, C. M., Eds.), Nova Science Publishers,Hauppauge, NY, USA
17. Rodrigues, A. F., Alves, P. M., and Coroadinha, A. S. (2011)Production of retroviral and lentiviral gene therapy vectors: challenges in the manufacturing of lipid enveloped virus, In Viral gene therapy  (Xu, K., Ed.), InTech, [S.l.]
18. Rodrigues, M. L., Pereira, I. A. C., and Archer, M. (2011) The NrfH Cytochrome c Quinol Dehydrogenase, In Encyclopedia of Inorganic and Bioinorganic Chemistry, John Wiley &Sons, Ltd.http://dx.doi.org/10.1002/9781119951438.eibc0648
19. Roldão, A., Silva, A. C., Mellado, M. C. M., Alves, P. M., and Carrondo, M. J. T. (2011) 1.47 - Viruses and virus-like particles in biotechnology: fundamentals and applications, In Comprehensive Biotechnology (Second Edition) (Murray, M.-Y., Ed.), pp 625-649, Academic Press, Burlington.http://dx.doi.org/10.1016/B978-0-08-088504-9.00072-6
20. Santos, H., Lamosa, P., Borges, N., Gonçalves, L. G., Pais,T., and Rodrigues, M. V. (2011) Organic compatible solutes of prokaryotes that thrive in hot environments: the importance of ionic compounds for thermostabilization, In Extremophiles handbook (Horikoshi, K., Antranikian, G., Bull, A. T., Robb, F. T., and Stetter,K. O., Eds.), pp 497-520, Springer Japan.http://dx.doi.org/10.1007/978-94-007-1235-5_4
21. Taga, M. E., and Xavier, K. B. (2011) Methods for analysis of bacterial autoinducer-2 production, In Current Protocols in Microbiology (Coico, R., Kowalik, T., Quarles, J. M., Stevenson, B., and Taylor, R. K., Eds.), pp 1C.1.1–1C.1.15, John Wiley & Sons, Inc., [S.l.].http://dx.doi.org/10.1002/9780471729259.mc01c01s23
22. Teixeira, A. P., Oliveira, R., Alves, P. M., and Carrondo, M. J. T. (2011) 2.63 - Online control strategies, In Comprehensive Biotechnology (Second Edition) (Murray, M.-Y., Ed.), pp 875-882, Academic Press, Burlington.http://dx.doi.org/10.1016/B978-0-08-088504-9.00143-4
23. Trindade, I., Santos, D., Dalmay, T., and Fevereiro, P. (2011)Facing the environment: small RNAs and the regulation of gene expression under abiotic stress in plants, In Abiotic stress response in plants - physiological, biochemical and genetic perspectives (Shanker, A., and Venkateswarlu, B., Eds.), pp 113-136, InTech, [S.l.]
24. Vaz Patto, M. C., Hanbury, C. D., Van Moorhem, M., Lambein,F., Ochatt, S., and Rubiales, D. (2011) Grass pea (Lathyrus sativus L.), In Genetics, genomics and breeding of cool season grain legumes (Perez de la Vega, M., Torres, A. M., Cubero, J. I.,and Kole, C. R., Eds.), pp 151-204, CRC Press / Science Publishers Inc,Enfield, NH
25. Veiga, A. (2011) Food defence and security: the new reality, In Environmental security and ecoterrorism (Alpas, H., Berkowicz, S. M. M.,and Ermakova, I., Eds.), pp 39-54, Springer Netherlands, Dordrecht.http://dx.doi.org/10.1007/978-94-007-1235-5_4
26. Vicente, J. B., Carrondo, M. A., Teixeira, M., and Frazão, C.(2011) Flavodiiron Proteins: Nitric Oxide and/or Oxygen Reductases, In Encyclopedia of Inorganic and Bioinorganic Chemistry, John Wiley & Sons, Ltd.http://dx.doi.org/10.1002/9781119951438.eibc0645