Selected Publications
1. MARGALHA L, Elias CA, Belda-Palazón B, Peixoto B, Confraria A, Baena-González E (2023). HOS1 promotes tolerance to low-energy stress via the SnRK1 protein kinase. Plant J 115: 627-641. doi:10.1111/tpj.16250
2. ALBUQUERQUE-MARTINS R, Szakonyi D, Rowe J, Jones AM, Duque P (2023). ABA signaling prevents phosphodegradation of the SR45 splicing factor to alleviate inhibition of early seedling development in Arabidopsis. Plant Communications, 4(2) 100495. doi: 10.1016/j.xplc.2022.100495
3. DONG Y, Duan S, Xia Q, Liang Z, Dong X, Margaryan K, Musayev M, Goryslavets S, Zdunić G, Pierre-François B, Lacombe T, Maul E, Nick P, Bitskinashvili K, Bisztray GD, Drori E, De Lorenzis G, Cunha J, Popescu CF, Arroyo-Garcia R, Arnold C, Ergül A, Zhu Y, Ma C, Wang S, Liu S, Tang L, Wang C, Li D, Pan Y, Li J, Yang L, Li X , Xiang G, Yang Z, Chen B, Dai Z, Wang Y, Arakelyan A, Kuliyev V, Spotar G, Girollet N, Delrot S, Ollat N, This P, Marchal C, Sarah G, Laucou V, Bacilieri R, Röckel F, Guan P, Jung A, Riemann M, Ujmajuridze L, Zakalashvili T, Maghradze D, Höhn M, Jahnke G, Kiss E, Deák T, Rahimi O, Hübner S, Grassi F, Mercati F, Sunseri F, Eiras-Dias J, Dumitru AM, Carrasco D, Rodriguez-Izquierdo A, Muñoz G, Uysal T, Özer C, Kazan K, Xu M, Wang Y, Zhu S, Lu J, Zhao M, Wang L, Jiu S, Zhang Y, Sun L, Yang H, Weiss E, Wang S, Zhu Y, Li S, Sheng J, Chen W (2023). Dual domestications and origin of traits in grapevine evolution. Science 379, 6635, 892-901. doi: 10.1126/science.add8655
4. FARIA JMS, Cavaco T, Gonçalves D, Barbosa P, Teixeira DM, Moiteiro C, Inácio ML (2023). First Report on the Synergistic Interaction between Essential Oils against the Pinewood Nematode Bursaphelenchus xylophilus. Plants 12 (13), 2438. doi: 10.3390/plants12132438
5. MISRA CS, Sousa AGG, Barros PM, Kermanov A, Becker JD (2023). Cell-type-specific alternative splicing in the Arabidopsis germline. Plant Physiology, kiac574. doi:10.1093/plphys/kiac574
6. QUINTAS-NUNES F, Brandão PR, Barreto Crespo MT, Glick BR, Nascimento FX. (2023) Plant Growth Promotion, Phytohormone Production and Genomics of the Rhizosphere- Associated Microalga, Micractinium rhizosphaerae sp. nov. Plants (Basel).12(3):65. doi:10.3390/plants12030651
7. NIZA COSTA M, Gil T, Teixeira R, Rodrígues dos Santos AS, Rebelo Romão I, Sequero López C, Vílchez JI (2023). Combined Use of a Bacterial Consortium and Early-Colonizing Plants as a Treatment for Soil Recovery after Fire: A Model Based on Los Guájares (Granada, Spain) Wildfire. Biology, 12, 1093. doi: 10.3390/biology12081093
8. ANDRADE L, Lu Y, Cordeiro A, Costa JMF, Wigge PA, Saibo NJM, Jaeger KE (2022). The evening complex integrates photoperiod signals to control flowering in rice. PNAS, 119(26). doi:10.1073/pnas.2122582119
9. LEAL AR, Barros PM, Parizot B, Sapeta H, Vangheluwe N, Andersen TG, Beeckman T, Oliveira MM (2022). Translational profile of developing phellem cells in Arabidopsis thaliana roots. Plant Journal, 110(3) 899-915. doi: 10.1111/tpj.15691
10. VASCO E, Dias MG, Oliveira L (2022). The first harmonised total diet study in Portugal: Nitrate occurrence and exposure assessment. Food Chemistry, 392 133152. doi: 10.1016/j.foodchem.2022.133152
11. LEITÃO ST, Santos C, Araújo SS, Rubiales D, Vaz Patto MC (2021) Shared and tailored common bean transcriptomic responses to combined fusarium wilt and water deficit. Horticulture Research 8:149. doi: 10.1038/s41438-021-00583-2
12. JULCA I, Ferrari C, Flores-Tornero M, Proost S, Lindner AC, Hackenberg D, Steinbachová, L, Michaelidis C, Gomes Pereira S, Misra CS, Kawashima T, Borg M, Berger F, Goldberg J, Johnson M, Honys D, Twell D, Sprunck S, Dresselhaus T, Becker JD, Mutwil M (2021). Comparative transcriptomic analysis reveals conserved programmes underpinning organogenesis and reproduction in land plants. Nature Plants, 7(8), pp.1143-1159. doi:10.1038/s41477-021-00958-2
13. GUTAKER RM, Groen SC, Bellis ES, Choi JY, Pires IS, Bocinsky RK, Slayton ER, Wilkins O, Castillo CC, Negrão S, Oliveira MM, Fuller DQ, d'Alpoim Guedes JA, Lasky JR, Purugganan MD (2020). Genomic history and ecology of the geographic spread of rice. Nature Plants 6 5: 492-502. doi: 10.1038/s41477-020-0659-6
14. PEREIRA PA, Boavida LC, Santos MR, Becker JD (2020). AtNOT1 is required for gametophyte development in Arabidopsis. Plant Journal, 103: 1289-1303. doi: 10.1111/tpj.14801
15. BOVDILOVA A, Alexandre BM, Höppner A, Luís IM, Alvarez CE, Bickel D, Gohlke H, Decker C, Nagel-Steger L, Alseekh S, Fernie AR, Drincovich MF, Abreu IA, Maurino VG (2019). Posttranslational modification of the NADP-malic enzyme involved in C4 photosynthesis modulates the enzymatic activity during the day. Plant Cell, 31(10), 2525-2539. doi:10.1105/tpc.19.00406
16. RODRIGUES A, Adamo M, Crozet P, Margalha L, Confraria A, Martinho C, Elias A, Rabissi A, Lumbreras V, Gonzalez-Guzman M, Antoni R, Rodriguez PL, Baena-Gonzalez E (2013) ABI1 and PP2CA phosphatases are negative regulators of Snf1-Related Protein Kinase1 signaling in Arabidopsis. Plant Cell, 25(10):3871-3884. doi: 10.1105/tpc.113.114066
17. CARVALHO RF, Szakonyi D Simpson CG, Barbosa ICR, Brown JWS, Baena-González E, Duque P (2016) The Arabidopsis Sr45 splicing factor, a negative regulator of sugar signaling, modulates Snf1-related protein kinase 1 (Snrk1) stability 2016, Plant Cell 28(8), 1910-1925. doi: 10.1105/tpc.16.00301
18. REMY E, Cabrito TR, Baster P, Batista RA, Teixeira MC, Friml J, Sa-Correia I, Duque P (2013) A major facilitator superfamily transporter plays a dual role in polar auxin transport and drought stress tolerance in Arabidopsis. Plant Cell, 25(3):901-926. doi: 10.1105/tpc.113.110353
19. REMY E, Cabrito TR, Batista RA, Hussein MAM, Teixeira MC, Athanasiadis A, Sa-Correia I, Duque P (2014) Intron retention in the 5´ UTR of the Novel zif2 transporter enhances translation to promote zinc tolerance in Arabidopsis. Plos Genetics, 10(5):e1004375. doi: 10.1371/journal.pgen.1004375
20. ORTIZ-RAMÍREZ C, Hernandez-Coronado M, Thamm A, Catarino B, Wang M, Dolan L, Feijó JA, Becker JD (2016) A Transcriptome Atlas of Physcomitrella patens provides insights into the evolution and development of land plants. Molecular Plant, 9(2):205-220. doi: 10.1016/j.molp.2015.12.002
21. ORTIZ-RAMÍREZ C, Michard E, Simon AA, Damineli DSC, Hernández-Coronado M, Becker JD, Feijó JA (2017) GLUTAMATE RECEPTOR-LIKE channels are essential for chemotaxis and reproduction in mosses. Nature, 549(7670):91-95. doi: 10.1038/nature23478
22. NUNES C, O´Hara LE, Primavesi LF, Delatte TL, Schluepmann H, Somsen GW, Silva AB, Fevereiro PS, Wingler A, Paul MJ (2013) The Trehalose 6-Phosphate/SnRK1 signaling pathway primes growth recovery following relief of sink limitation. Plant Physiology, 162(3): 1720-1732. doi: 10.1104/pp.113.220657
23. ALMADANIM MC, Alexandre BM, Rosa MTG, Sapeta H, Leitao AE, Ramalho JC, Lam TT, Negrão S, Abreu IA, Oliveira MM (2017) Rice calcium-dependent protein kinase OsCPK17 targets plasma membrane intrinsic protein and sucrose-phosphate synthase and is required for a proper cold stress response. Plant, Cell and Environment, 40(7):1197-1213. (cover image) doi: 10.1111/pce.12916
24. CORDEIRO AM, Figueiredo DD, Tepperman J, Borba AR, Lourenco T, Abreu IA, Ouwerkerk PBF, Quail PH, Oliveira MM, Saibo NJM (2016) Rice phytochrome-interacting factor protein OsPIF14 represses OsDREB1B gene expression through an extended N-box and interacts preferentially with the active form of phytochrome B. Biochimica Et Biophysica Acta-Gene Regulatory Mechanisms, 1859:393-404. doi:10.1016/j.bbagrm.2015.12.008
25. BATISTA R, Fonseca C, Planchon S, Negrão S, Renaut J, Oliveira MM (2017) Environmental stress is the major cause of transcriptomic and proteomic changes in GM and non-GM plants. Scientific Reports, 7(1):10624. doi:10.1038/s41598-017-09646-8
26. NEGRÃO S, Almadanim C, Pires I, Abreu I, Maroco J, Courtois B, Gregorio G, McNally K, Oliveira M (2013) New allelic variants found in key rice salt-tolerance genes: an association study. Plant Biotechnology Journal, 11: 87-100. doi: 10.1111/pbi.12010
27. ALVES ML, Brites C, Paulo M, Carbas B, Belo M, Mendes-Moreira P, Brites C, Bronze MR, Gunjaca J, Satovic Z, Vaz Patto MC (2017) Setting up decision-making tools towards a quality-oriented participatory maize breeding program. Frontiers in Plant Science, 8, 2203. doi.org/10.3389/fpls.2017.02203
28. CAROCHA V, Soler M, Hefer C, Cassan-Wang H, Fevereiro P, Myburg AA, Paiva JAP, Grima-Pettenati J (2015) Genome-wide analysis of the lignin toolbox of Eucalyptus grandis. New Phytologist, 206(4):1297-1313. doi: 10.1111/nph.13313
29. INÁCIO V, Barros PM, Costa A, Roussado C, Gonçalves E, Costa R, Graça J, Oliveira MM, Morais-Cecílio L (2017) Differential DNA methylation patterns are related to phellogen origin and quality of Quercus suber cork. PLoS ONE 12(1): e0169018. doi:10.1371/journal. pone.0169018
30. CATRY F, Branco M, Sousa E, Caetano J, Pedro Naves P, Nóbrega F (2017). Presence and dynamics of ambrosia beetles and other xylophagous insects in a Mediterranean cork oak forest following fire. Forest Ecology and Management ,404: 45-54. doi.org/10.1016/j.foreco.2017.08.029
