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ITQB articles published in 2011

Articles indexed in ISI

  1. Abrantes, M., Lopes, M. d. F., and Kok, J. (2011) Impact of manganese,copper and zinc ions on the transcriptome of the nosocomial pathogen Enterococcus faecalis V583, PLoS ONE 6(10): e26519
  2. Adamova, G., Gardas, R. L., Rebelo, L. P. N., Robertson, A. J., and Seddon, K. R. (2011) Alkyltrioctylphosphonium chloride ionic liquids: synthesis and physicochemical properties, Dalton Transactions 40(47): 12750-12764
  3. Adler, S., Basketter, D., Creton, S., Pelkonen, O., van Benthem, J., Zuang, V., Andersen, K. E., Angers-Loustau, A., Aptula, A., Bal-Price, A., Benfenati, E., Bernauer, U., Bessems, J., Bois, F. Y., Boobis, A., Brandon, E., Bremer, S., Broschard, T., Casati, S., Coecke, S., Corvi, R., Cronin, M., Daston, G., Dekant, W., Felter, S., Grignard, E., Gundert-Remy, U., Heinonen, T., Kimber, I., Kleinjans, J., Komulainen, H., Kreiling, R., Kreysa, J., Leite, S. B., Loizou, G., Maxwell, G., Mazzatorta, P., Munn, S., Pfuhler, S., Phrakonkham, P., Piersma, A., Poth, A., Prieto, P., Repetto, G., Rogiers, V., Schoeters, G., Schwarz, M., Serafimova, R., Tahti, H., Testai, E., van Delft, J., van Loveren, H., Vinken, M., Worth, A., and Zaldivar, J. M. (2011) Alternative (non-animal) methods for cosmetics testing: current status and future prospects-2010, Archives of Toxicology 85(5): 367-485
  4. Ahmadi, N., Negrao, S., Katsantonis, D., Frouin, J., Ploux, J.,Letourmy, P., Droc, G., Babo, P., Trindade, H., Bruschi, G., Greco, R.,Oliveira, M. M., Piffanelli, P., and Courtois, B. (2011) Targeted association analysis identified japonica rice varieties achieving Na(+)/K(+) homeostasis without the allelic make-up of the salt tolerant indica variety Nona Bokra, Theoretical and Applied Genetics 123(6): 881-895
  5. Alexov, E., Mehler, E. L., Baker, N., Baptista, A. M., Huang, Y., Milletti, F., Nielsen, J. E., Farrell, D., Carstensen, T., Olsson, M. H. M., Shen, J. K., Warwicker, J., Williams, S., and Word, J. M. (2011) Progress in the prediction of pK(a) values in proteins, Proteins-Structure Function and Bioinformatics 79(12): 3260-3275
  6. Almeida, J. F., Ferreira, P., Lopes, A., and Gil, M. H. (2011) Photocrosslinkable biodegradable responsive hydrogels as drug delivery systems, International Journal of Biological Macromolecules 49(5): 948-954
  7. Alves, A. S., Paquete, C. M., Fonseca, B. M., and Louro, R. O. (2011) Exploration of the 'cytochromome' of Desulfuromonas acetoxidans, a marine bacterium capable of powering microbial fuel cells, Metallomics 3(4): 349-353
  8. Alves, M., Chicau, P., Matias, H., Passarinho, J., Pinheiro, C., and Ricardo, C. P. (2011) Metabolic analysis revealed altered amino acid profiles in Lupinus albus organs as a result of boron deficiency, Physiologia Plantarum 142(3): 224-232
  9. Alves, M., Moes, S., Jeno, P., Pinheiro, C., Passarinho, J., and Ricardo, C. P. (2011) The analysis of Lupinus albus root proteome revealed cytoskeleton altered features due to long-term boron deficiency, Journal of Proteomics 74(8): 1351-1363
  10. Amaral, A. I., Teixeira, A. P., Sonnewald, U., and Alves, P. M. (2011) Estimation of intracellular fluxes in cerebellar neurons after hypoglycemia: importance of the pyruvate recycling pathway and glutamine oxidation, Journal of Neuroscience Research 89(5): 700-710
  11. Amaro, H. M., Guedes, A. C., and Malcata, F. X. (2011) Advances and perspectives in using microalgae to produce biodiesel, Applied Energy 88(10): 3402-3410
  12. Araujo, J. M. M., Ferreira, R., Marrucho, I. M., and Rebelo, L. P. N. (2011) Solvation of nucleobases in 1,3-dialkylimidazolium acetate ionic liquids: NMR spectroscopy insights into the dissolution mechanism, Journal of Physical Chemistry B 115(35): 10739-10749
  13. Argemi, A., Domingo, C., de Sousa, A. R. S., Duarte, C. M. M., Garcia-Gonzalez, C. A., and Saurina, J. (2011) Characterization of new topical ketoprofen formulations prepared by drug entrapment in solid lipid matrices, Journal of Pharmaceutical Sciences 100(11): 4783-4789
  14. Ascenso, O. S., Marques, J. C., Santos, A. R., Xavier, K. B., Ventura, M. R., and Maycock, C. D. (2011) An efficient synthesis of the precursor of AI-2, the signalling molecule for inter-species quorum sensing, Bioorganic & Medicinal Chemistry 19(3): 1236-1241
  15. Astier, Y., Datas, L., Carney, R., Stellacci, F., Gentile, F., and DiFabrizio, E. (2011) Artificial surface-modified Si3N4 nanopores for single surface-modified gold nanoparticle scanning, Small 7(4): 455-459
  16. Atilano, M. L., Yates, J., Glittenberg, M., Filipe, S. R., and Ligoxygakis, P. (2011) Wall teichoic acids of Staphylococcus aureus limit recognition by the drosophila peptidoglycan recognition protein-SA to promote pathogenicity, Plos Pathogens 7(12): 2421-2421
  17. Bali, S., Lawrence, A. D., Lobo, S. A., Saraiva, L. M., Golding, B. T., Palmer, D. J., Howard, M. J., Ferguson, S. J., and Warren, M. J. (2011) Molecular hijacking of siroheme for the synthesis of heme and d(1) heme, Proceedings of the National Academy of Sciences of the United States of America 108(45): 18260-18265
  18. Baltazar, C. S. A., Marques, M. C., Soares, C. M., DeLacey, A. M., Pereira, I. A. C., and Matias, P. M. (2011) Nickel-iron-selenium hydrogenases - an overview, European Journal of Inorganic Chemistry , 2011(7)948-962
  19. Barreto, M. C., Boas, L. V., Carneiro, L. C., and Romao, M. V. S. (2011) Volatile compounds in samples of cork and also produced by selected fungi, Journal of Agricultural and Food Chemistry 59(12): 6568-6574
  20. Barreto, M. C., Frisvad, J. C., Larsen, T. O., Mogensen, J., and Romao, M. V. S. (2011) Exo-metabolome of some fungal isolates growing on cork-based medium, European Food Research and Technology 232(4): 575-582
  21. Barreto, M. C., Houbraken, J., Samson, R. A., Frisvad, J. C., and Romao, M. V. S. (2011) Taxonomic studies of the Penicillium glabrum complex and the description of a new species P. subericola, Fungal Diversity 49(5): 23-33
  22. Batista, A. P., Marreiros, B. C., and Pereira, M. M. (2011) Decoupling of the catalytic and transport activities of complex I from Rhodothermus marinus by sodium/proton antiporter inhibitor, ACS Chemical Biology 6(5): 477-483
  23. Batista, A. P., and Pereira, M. M. (2011) Sodium influence on energy transduction by complexes I from Escherichia coli and Paracoccus denitrificans, Biochimica Et Biophysica Acta-Bioenergetics 1807(3): 286-292
  24. Batista-Nascimento, L., Neef, D. W., Liu, P. C. C., Rodrigues-Pousada, C., and Thiele, D. J. (2011) Deciphering human heat shock transcription factor 1 regulation via post-translational modification in yeast, PLoS ONE 6(1): e15976
  25. Bernardes, C. E. S., da Piedade, M. E. M., and Lopes, J. N. C. (2011) The structure of aqueous solutions of a hydrophilic ionic liquid: the full concentration range of 1-ethyl-3-methylinnidazolium ethylsulfate and water, Journal of Physical Chemistry B 115(9): 2067-2074
  26. Bernier, N., Costa, J., Delgado, R., Felix, V., Royal, G., and Tripier, R. (2011) trans-Methylpyridine cyclen versus cross-bridged trans-methylpyridine cyclen. Synthesis, acid-base and metal complexation studies (metal = Co2+, Cu2+, and Zn2+), Dalton Transactions 40(17): 4514-4526
  27. de Bettencourt, A. M., Duarte, M. F., Florencio, M. H., Henriques, F. F., Madeira, P. A., Maria, I. P. A., and Vilas-Boas, L. F. (2011) Possible key intermediates in arsenic biochemistry: synthesis and identification by liquid chromatography electrospray ionization mass spectrometry and high resolution mass spectrometry, Microchemical Journal 99(2): 218-234
  28. Botelho, H. M., and Gomes, C. M. (2011) Structural reorganization renders enhanced metalloprotein stability, Chemical Communications 47(39): 11149-11151
  29. Bouchami, O., Achour, W., Mekni, M. A., Rolo, J., and Ben Hassen, A. (2011) Antibiotic resistance and molecular characterization of clinical isolates of methicillin-resistant coagulase-negative staphylococci isolated from bacteremic patients in oncohematology, Folia Microbiologica 56(2): 122-130
  30. Bouchami, O., Ben Hassen, A., de Lencastre, H., and Miragaia, M. (2011) Molecular epidemiology of methicillin-resistant Staphylococcus hominis (MRSHo): low clonality and reservoirs of SCCmec structural elements, PLoS ONE 6(7): e21940
  31. Braga, T. M., Marujo, P. E., Pomba, C., and Lopes, M. F. S. (2011) Involvement, and dissemination, of the enterococcal small multidrug resistance transporter QacZ in resistance to quaternary ammonium compounds, Journal of Antimicrobial Chemotherapy 66(2): 283-286
  32. Brito, J. A., Borges, N., Vonrhein, C., Santos, H., and Archer, M. (2011) Crystal structure of archaeoglobus fulgidus CTP:inositol-1-phosphate cytidylyltransferase, a key enzyme for di-myo-inositol-phosphate synthesis in (hyper) thermophiles, Journal of Bacteriology 193(9): 2177-2185
  33. Brito, J. A., Ladeira, S., Teuma, E., Royo, B., and Gomez, M. (2011) Dioxomolybdenum(VI) complexes containing chiral oxazolines applied in alkenes epoxidation in ionic liquids: a highly diastereoselective catalyst, Applied Catalysis A-General 398(1-2): 88-95
  34. Brito, J. A., Royo, B., and Gomez, M. (2011) An overview of chiral molybdenum complexes applied in enantioselective catalysis, Catalysis Science & Technology 1(2): 1109-1118
  35. Caldeira, A. T., Arteiro, J. M. S., Coelho, A. V., and Roseiro, J. C. (2011) Combined use of LC-ESI-MS and antifungal tests for rapid identification of bioactive lipopeptides produced by Bacillus amyloliquefaciens CCMI 1051, Process Biochemistry 46(9): 1738-1746
  36. Campelo, A. B., Gaspar, P., Roces, C., Rodriguez, A., Kok, J., Kuipers, O. P., Neves, A. R., and Martinez, B. (2011) The Lcn972 bacteriocin-encoding plasmid pBL1 impairs cellobiose metabolism in Lactococcus lactis, Applied and Environmental Microbiology 77(21): 7576-7585
  37. Campos, E., Cordeiro, R., Santos, A. C., Matos, C., and Gil, M. H. (2011) Design and characterization of bi-soft segmented polyurethane microparticles for biomedical application, Colloids and Surfaces B-Biointerfaces 88(1): 477-482
  38. Campos, E., Moura, T. F., Oliva, A., Leandro, P., and Soveral, G. (2011) Lack of Aquaporin 3 in bovine erythrocyte membranes correlates with low glycerol permeation, Biochemical and Biophysical Research Communications 408(3): 477-481
  39. Capitao, C., Paiva, J. A. P., Santos, D. M., and Fevereiro, P. (2011) In Medicago truncatula, water deficit modulates the transcript accumulation of components of small RNA pathways, BMC Plant Biology 11, ART79
  40. Carilho, R., de Carvalho, M., Kuehl, U., Pinto, S., Pinto, A., Kromminga, A., and Costa, J. (2011) Erythropoietin and amyotrophic lateral sclerosis: plasma level determination, Amyotrophic Lateral Sclerosis 12(6): 439-443
  41. Carinhas, N., Bernal, V., Teixeira, A. P., Carrondo, M. J. T., Alves, P. M., and Oliveira, R. (2011) Hybrid metabolic flux analysis: combining stoichiometric and statistical constraints to model the formation of complex recombinant products, BMC Systems Biology 5, ART34
  42. Carinhas, N., Robitaille, A. M., Moes, S., Carrondo, M. J. T., Jenoe, P., Oliveira, R., and Alves, P. M. (2011) Quantitative proteomics of Spodoptera frugiperda cells during growth and baculovirus infection, PLoS ONE 6(10): e26444
  43. Carrondo, M., Panet, A., Wirth, D., Coroadinha, A. S., Cruz, P., Falk, H., Schucht, R., Dupont, F., Geny-Fiamma, C., Merten, O. W., and Hauser, H. (2011) Integrated strategy for the production of therapeutic retroviral vectors, Human Gene Therapy 22(3): 370-379
  44. Carvalhal, A. V., Santos, S. S., and Carrondo, M. J. T. (2011) Extracellular purine and pyrimidine catabolism in cell culture, Biotechnology Progress 27(5): 1373-1382
  45. Carvalho, A. L., Cardoso, F. S., Bohn, A., Neves, A. R., and Santos, H. (2011) Engineering trehalose synthesis in Lactococcus lactis for improved stress tolerance, Applied and Environmental Microbiology 77(12): 4189-4199
  46. Carvalho, A. P., Silva, S. O., Baptista, J. M., and Malcata, F. X. (2011) Light requirements in microalgal photobioreactors: an overview of biophotonic aspects, Applied Microbiology and Biotechnology 89(5): 1275-1288
  47. Carvalho, G., Almeida, B., Fradinho, J., Oehmen, A., Reis, M. A. M., and Crespo, M. T. B. (2011) Microbial characterization of mercury-reducing mixed cultures enriched with different carbon sources, Microbes and Environments 26(4): 293-300
  48. Carvalho, M. B., Tavares, S., Medeiros, J., Nunez, O., Gallart-Ayala, H., Leitao, M. C., Galceran, M. T., Hursthouse, A., and Pereira, C. S. (2011) Degradation pathway of pentachlorophenol by Mucor plumbeus involves phase II conjugation and oxidation-reduction reactions, Journal of Hazardous Materials 198, 133-142
  49. Carvalho, S. M., Kloosterman, T. G., Kuipers, O. P., and Neves, A. R. (2011) CcpA ensures optimal metabolic fitness of Streptococcus pneumoniae, PLoS ONE 6(10): e26707
  50. Chaves, I., Alves, M., Carrilho, D., Duque-Magalhaes, M. C., Ricardo, C. P., and Regalado, A. P. (2011) Protein changes during programmed cell death in tobacco, Biologia Plantarum 55(1): 153-158
  51. Chaves, I., Passarinho, J. A. P., Capitao, C., Chaves, M. M., Fevereiro, P., and Ricardo, C. P. P. (2011) Temperature stress effects in Quercus suber leaf metabolism, Journal of Plant Physiology 168(15): 1729-1734
  52. Cmoch, A., Strzelecka-Kiliszek, A., Palczewska, M., Groves, P., and Pikula, S. (2011) Matrix vesicles isolated from mineralization-competent Saos-2 cells are selectively enriched with annexins and S100 proteins, Biochemical and Biophysical Research Communications 412(4): 683-687
  53. Conceicao, T., Aires-de-Sousa, M., Pona, N., Brito, M. J., Barradas, C., Coelho, R., Sardinha, T., Sancho, L., de Sousa, G., Machado, M. D., and de Lencastre, H. (2011) High prevalence of ST121 in community-associated methicillin-susceptible Staphylococcus aureus lineages responsible for skin and soft tissue infections in Portuguese children, European Journal of Clinical Microbiology & Infectious Diseases 30(2): 293-297
  54. Conde, A., Chaves, M. M., and Geros, H. (2011) Membrane transport, sensing and signaling in plant adaptation to environmental stress, Plant and Cell Physiology 52(9): 1583-1602
  55. Correia, B., Chen, Z. J., Mendes, S., Martins, L. O., and Bento, I. (2011) Crystallization and preliminary X-ray diffraction analysis of the azoreductase PpAzoR from Pseudomonas putida MET94, Acta Crystallographica Section F-Structural Biology and Crystallization Communications 67, 121-123
  56. Correia, B. E., Ban, Y. E. A., Friend, D. J., Ellingson, K., Xu, H. Y., Boni, E., Bradley-Hewitt, T., Bruhn-Johannsen, J. F., Stamatatos, L., Strong, R. K., and Schiefl, W. R. (2011) Computational protein design using flexible backbone remodeling and resurfacing: case studies in structure-based antigen design, Journal of Molecular Biology 405(1): 284-297
  57. Correia, V. G., Bonifacio, V. D. B., Raje, V. P., Casimiro, T., Moutinho, G., da Silva, C. L., Pinho, M. G., and Aguiar-Ricardo, A. (2011) Oxazoline-based antimicrobial oligomers: synthesis by CROP using supercritical CO(2), Macromolecular Bioscience 11(8): 1128-1137
  58. Costa, A. J. L., Esperanca, J. M. S. S., Marrucho, I. M., and Rebelo, L. P. N. (2011) Densities and vscosities of 1-ehyl-3-methylimidazolium n-akyl sulfates, Journal of Chemical and Engineering Data 56(8): 3433-3441
  59. da Costa, A. P., Lopes, R., Cardoso, J. M. S., Mata, J. A., Peris, E., and Royo, B. (2011) Enantiomerically pure cyclopentadienyl- and indenyl-functionalized N-heterocyclic carbene complexes of iridium and rhodium, Organometallics 30(16): 4437-4442
  60. da Costa, G., Gomes, R. A., Guerreiro, A., Mateus, E., Monteiro, E., Barroso, E., Coelho, A. V., Freire, A. P., and Cordeiro, C. (2011) Beyond genetic factors in familial amyloidotic polyneuropathy: protein glycation and the loss of fibrinogen's chaperone activity, PLoS ONE 6(10):e24850
  61. Costa, P. M., Miguel, C., Caeiro, S., Lobo, J., Martins, M., Ferreira, A. M., Caetano, M., Vale, C., DelValls, T. A., and Costa, M. H. (2011) Transcriptomic analyses in a benthic fish exposed to contaminated estuarine sediments through laboratory and in situ bioassays, Ecotoxicology 20(8): 1749-1764
  62. Courtois, B., Greco, R., Bruschi, G., Frouin, J., Ahmadi, N., Droc, G., Hamelin, C., Ruiz, M., Evrard, J. C., Katsantonis, D., Oliveira, M., Negrao, S., Cavigiolo, S., Lupotto, E., and Piffanelli, P. (2011) Molecular characterization of the European rice collection in view of association mapping, Plant Genetic Resources-Characterization and Utilization 9(2): 233-235
  63. Damas, J. M., Oliveira, A. S. F., Baptista, A. M., and Soares, C. M. (2011) Structural consequences of ATP hydrolysis on the ABC transporter NBD dimer: molecular dynamics studies of HlyB, Protein Science 20(7): 1220-1230
  64. Dantas, J. M., Saraiva, I. H., Morgado, L., Silva, M. A., Schiffer, M.,Salgueiro, C. A., and Louro, R. O. (2011) Orientation of the axial ligands and magnetic properties of the hemes in the cytochrome c(7)family from Geobacter sulfurreducens determined by paramagnetic NMR, Dalton Transactions 40(47): 12713-12718
  65. Deive, F. J., Rodriguez, A., Marrucho, I. M., and Rebelo, L. P. N. (2011) Aqueous biphasic systems involving alkylsulfate-based ionic liquids, Journal of Chemical Thermodynamics 43(11): 1565-1572
  66. Deive, F. J., Rodriguez, A., Pereiro, A. B., Araujo, J. M. M., Longo, M. A., Coelho, M. A. Z., Lopes, J. N. C., Esperanca, J. M. S. S., Rebelo, L. P. N., and Marrucho, I. M. (2011) Ionic liquid-based aqueous biphasic system for lipase extraction, Green Chemistry 13(2): 390-396
  67. Deive, F. J., Rodriguez, A., Varela, A., Rodrigues, C., Leitao, M. C., Houbraken, J., Pereiro, A. B., Longo, M. A., Sanroman, M. A., Samson, R. A., Rebelo, L. P. N., and Pereira, C. S. (2011) Impact of ionic liquids on extreme microbial biotypes from soil, Green Chemistry 13(3): 687-696
  68. Deus, H. F., Correa, M. C., Stanislaus, R., Miragaia, M., Maass, W., de Lencastre, H., Fox, R., and Almeida, J. S. (2011) S3QL: A distributed domain specific language for controlled semantic integration of life sciences data, BMC Bioinformatics 12, ART285
  69. Di Pippo, F., Bohn, A., Cavalieri, F., and Albertano, P. (2011) H-1-NMR analysis of water mobility in cultured phototrophic biofilms, Biofouling 27(3): 327-336
  70. Diaz-Moreno, I., Garcia-Heredia, J. M., Diaz-Quintana, A., Teixeira, M., and De la Rosa, M. A. (2011) Nitration of tyrosines 46 and 48 induces the specific degradation of cytochrome c upon change of the heme iron state to high-spin, Biochimica Et Biophysica Acta-Bioenergetics 1807(12): 1616-1623
  71. Elberse, K. E. M., Nunes, S., Sa-Leao, R., van der Heide, H. G. J., and Schouls, L. M. (2011) Multiple-locus variable number tandem repeat analysis for Streptococcus pneumoniae: comparison with PFGE and MLST, PLoS ONE 6(5): e19668
  72. Escrevente, C., Keller, S., Altevogt, P., and Costa, J. (2011) Interaction and uptake of exosomes by ovarian cancer cells, BMC Cancer 11, ART108
  73. Esquivel, M. G., Amaro, H. M., Pinto, T. S., Fevereiro, P. S., and Malcata, F. X. (2011) Efficient H(2) production via Chlamydomonas reinhardtii, Trends in Biotechnology 29(12): 595-600
  74. Fagone, P., Mangano, K., Quattrocchi, C., Motterlini, R., Di Marco, R., Magro, G., Penacho, N., Romao, C. C., and Nicoletti, F. (2011) Prevention of clinical and histological signs of proteolipid protein (PLP)-induced experimental allergic encephalomyelitis (EAE) in mice by the water-soluble carbon monoxide-releasing molecule (CORM)-A1, Clinical and Experimental Immunology 163(3): 368-374
  75. Farinha, A. P., Irar, S., de Oliveira, E., Oliveira, M. M., and Pages, M. (2011) Novel clues on abiotic stress tolerance emerge from embryo proteome analyses of rice varieties with contrasting stress adaptation, Proteomics 11(12): 2389-2405
  76. Fernandes, A. M., Rocha, M. A. A., Freire, M. G., Marrucho, I. M., Coutinho, J. A. P., and Santos, L. M. N. B. F. (2011) Evaluation of cation-anion interaction strength in ionic liquids, Journal of Physical Chemistry B 115(14): 4033-4041
  77. Fernandes, A. S., Cabral, M. F., Costa, J., Castro, M., Delgado, R., Drew, M. G. B., and Felix, V. (2011) Two macrocyclic pentaaza compounds containing pyridine evaluated as novel chelating agents in copper(II) and nickel(II) overload, Journal of Inorganic Biochemistry 105(3): 410-419
  78. Fernandes, A. T., Pereira, M. M., Silva, C. S., Lindley, P. F., Bento, I., Melo, E. P., and Martins, L. O. (2011) The removal of a disulfide bridge in CotA-laccase changes the slower motion dynamics involved in copper binding but has no effect on the thermodynamic stability, Journal of Biological Inorganic Chemistry 16(4): 641-651
  79. Fernandes, H. L., Albert, M. V., and Kording, K. P. (2011) Measuring generalization of visuomotor perturbations in wrist movements using mobile phones, PLoS ONE 6(5): e20290
  80. Fernandes, J. A., Paz, F. A. A., and Romao, C. C. (2011) cis-Di-mu-oxido-bis (N,N-diethyldithiocarbamato-kappa S-2,S ')oxidomolybdenum(V) (Mo-Mo) tetrahydrofuran monosolvate, Acta Crystallographica Section E-Structure Reports Online 67, M288-U2128
  81. Ferreira, A. R., Dias, J. M. L., Teixeira, A. P., Carinhas, N., Portela, R. M. C., Isidro, I. A., von Stosch, M., and Oliveira, R. (2011) Projection to latent pathways (PLP): a constrained projection to latent variables (PLS) method for elementary flux modes discrimination, BMC Systems Biology 5, ART181
  82. Filipe, L. C. S., Machuqueiro, M., and Baptista, A. M. (2011) Unfolding the conformational behavior of peptide dendrimers: insights from molecular dynamics simulations, Journal of the American Chemical Society 133(13): 5042-5052
  83. Fondevilla, S., Almeida, N. F., Satovic, Z., Rubiales, D., Patto, M. C. V., Cubero, J. I., and Torres, A. M. (2011) Identification of common genomic regions controlling resistance to Mycosphaerella pinodes, earliness and architectural traits in different pea genetic backgrounds, Euphytica 182(1): 43-52
  84. Fonseca, C., Olofsson, K., Ferreira, C., Runquist, D., Fonseca, L. L., Hahn-Hagerdal, B., and Liden, G. (2011) The glucose/xylose facilitator Gxf1 from Candida intermedia expressed in a xylose-fermenting industrial strain of Saccharomyces cerevisiae increases xylose uptake in SSCF of wheat straw, Enzyme and Microbial Technology 48(6-7): 518-525
  85. Fonseca, L. L., Sanchez, C., Santos, H., and Voit, E. O. (2011) Complex coordination of multi-scale cellular responses to environmental stress, Molecular Biosystems 7(3): 731-741
  86. Franco, C. F., Santos, R., and Coelho, A. V. (2011) Exploring the proteome of an echinoderm nervous system: 2-DE of the sea star radial nerve cord and the synaptosomal membranes subproteome, Proteomics 11(7): 1359-1364
  87. Franco, C. F., Santos, R., and Coelho, A. V. (2011) Proteome characterization of sea star coelomocytes - the innate immune effector cells of echinoderms, Proteomics 11(17): 3587-3592
  88. Freire, M. G., Louros, C. L. S., Rebelo, L. P. N., and Coutinho, J. A. P. (2011) Aqueous biphasic systems composed of a water-stable ionic liquid plus carbohydrates and their applications, Green Chemistry 13(6): 1536-1545
  89. Galego, L. R., Da Silva, J. P., Almeida, V. R., Bronze, M. R., and Boas, L. V. (2011) Preparation of novel distinct highly aromatic liquors using fruit distillates, International Journal of Food Science and Technology 46(1): 67-73
  90. Gamelas, C. A., Bandeira, N. A. G., Pereira, C. C. L., Calhorda, M. J., Herdtweck, E., Machuqueiro, M., Romao, C. C., and Veiros, L. F. (2011) Indenyl ring slippage in crown thioether complexes IndMo(CO)(2)L (+) and C-S activation of trithiacyclononane: experimental and theoretical studies, Dalton Transactions 40(40): 10513-10525
  91. Garcia-Heredia, J. M., Diaz-Quintana, A., Salzano, M., Orzaez, M., Perez-Paya, E., Teixeira, M., De la Rosa, M. A., and Diaz-Moreno, I. (2011) Tyrosine phosphorylation turns alkaline transition into a biologically relevant process and makes human cytochrome c behave as an anti-apoptotic switch, Journal of Biological Inorganic Chemistry 16(8): 1155-1168
  92. Gaspar, P., Neves, A. R., Gasson, M. J., Shearman, C. A., and Santos, H. (2011) High yields of 2,3-butanediol and mannitol in Lactococcus lactis through engineering of NAD(+) cofactor recycling, Applied and Environmental Microbiology 77(19): 6826-6835
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  8. Pinto, M. P., Santos, C. N., Henriques, C., Lima, G., and Quedas, F. (2011) Lycopene content and antioxidant capacity of Portuguese watermelon fruits, Electronic Journal of Environmental, Agricultural and Food Chemistry 10, 2090-2097
  9. Sanches, S., Barreto Crespo, M. T., and Pereira, V. J. (2011) Fugacity in the environment and wastewater removal predictions of toxic xenobiotics, Global Journal of Environmental Science and Technology 1: 8
  10. Tavares, L., Alves, P. M., Ferreira, R. B., and Santos, C. (2011) Comparison of different methods for DNA-free RNA isolation from SK-N-MC neuroblastoma, BMC Research Notes 4(1): 3
  11. Veith, A., Urich, T., Seyfarth, K., Protze, J., Frazao, C., and Kletzin, A. (2011) Substrate pathways and mechanisms of inhibition in the sulfur oxygenase reductase of Acidianus ambivalens, Frontiers in Microbiology 2



Book Chapters

  1. Amaro, H. M., and Malcata, F. X. (2011) Carotenoids from microalgae and cyanobacteria: features, production and applications, In Carotenoids: properties, effects and diseases (Yamaguchi, M., Ed.), Nova Science Publishers, Hauppauge, NY, USA
  2. Bento, I., Louro, R. O., Soares, C. M., and Carrondo, M. A. (2011) Tetraheme cytochromes C3, In Encyclopedia of Inorganic and Bioinorganic Chemistry, John Wiley & Sons, Ltd.
  3. Campos, A., Almeida, A. M., and Coelho, A. (2011) Blue native PAGE, basis of the technique and its use in organelle study: the mitochondrial complexome, In Mitochondria: structure,functions and dysfunctions (Svensson, L., Ed.), pp 975-982,Nova Science Publishers, Haupagge, NY, USA
  4. Chaves, M. M., Costa, J. M., and Saibo, N. (2011) Recent advances in photosynthesis under drought and salinity, In Plant responses to drought and salinity stress: developments in a post-genomic era (Turkan, I., Ed.), pp 49-104, Academic Press Ltd-Elsevier Science Ltd, London.
  5. Coelho, L., Silva, S. F. O., Tafulo, P. A. R., Santos, J. L.,Frazao, O., and Malcata, F. X. (2011) Optical fibre hydrogen sensors based on palladium coatings, In International Conference on Applications of Optics and Photonics (Costa, M. F. M., Ed.),Spie-Int Soc Optical Engineering, Bellingham.
  6. Giao, M. S., Guedes, A. C., and Malcata, F. X. (2011)Antioxidants from wild plants: sources, features and assays, In Wild Plants: identification, uses and conservation (Davis, R. E., Ed.), pp 63-104, Nova Science Publishers, Hauppauge, NY, USA
  7. Gonçalves V. L., Vicente J. B., Saraiva L. M. and Teixeira M.(2011)Flavodiiron proteins and their role in cyanobacteria. In G. A. Peschek et al. (Eds.), Bioenergetic processes of cyanobacteria: from evolutionary singularity to ecological diversity (pp. 631-653). Dordrecht: Springer Netherlands
  8. Kongo, J. M., and Malcata, F. X. (2011) Azorean traditional cheesemaking: a case study pertaining to a unique food chain, In Food chains: new research (Jensen, M. A., and Muller, D. W., Eds.), pp 137-170, Nova Science Publishers, Hauppauge, NY, USA
  9. Matos R. G., Pobre V., Reis F. P., Malecki M., Andrade J. M. and Arraiano C. M. (2011) Structure and Degradation Mechanisms of 3′ to 5′ Exoribonucleases, In Ribonucleases (A. W. Nicholson, Ed.), pp 193-222, Springer Berlin, Heidelberg (Nucleic Acids and Molecular Biology, 26)
  10. Neves, S. S., and Forrest, L. L. (2011) Plant DNA sequencing for phylogenetic analyses: from plants to sequences, In Network Biology (Cagney, G., and Emili, A., Eds.), pp 183-235, Humana Press.
  11. Neves, S. S. (2011) Eleusine, In Wild crop relatives: genomic and breeding resources (Kole, C., Ed.), pp 113-133, Springer Berlin Heidelberg, Heidelberg.
  12. Newton, A. C., Akar, T., Baresel, J. P., Bebeli, P. J., Bettencourt, E., Bladenopoulos, K. V., Czembor, J. H., Fasoula, D. A., Katsiotis, A., Koutis, K., Koutsika-Sotiriou, M., Kovacs, G., Larsson, H., Carvalho, M. A. A. P., Rubiales, D., Russell, J., Santos, T. M. M. d., and Patto, M. C. V. (2011) Cereal landraces for sustainable agriculture, In Sustainable agriculture (Lichtfouse, E., Hamelin, M., Navarrete, M., and Debaeke, P., Eds.), pp 147-186, Springer Netherlands, Dordrecht.
  13. Pereiro, A. B., and Rodriguez, A. (2011) Applications of ionic liquids in azeotropic mixtures separations, In Ionic liquids: applications and perspectives (Kokorin, A., Ed.), pp 225-242,InTech, [S.l]
  14. Peres, C. (2011) As bactérias lácticas na produção de azeitona probiótica, In AGRORRURAL: contributos científicos (Instituto Nacional de Recursos Biológicos, I. P., and Imprensa Nacional-Casa da Moeda, S. A., Eds.), pp 82-91, Imprensa Nacional-Casa da Moeda, S.A., Lisboa
  15. Pimentel, L. L., Crespo, M. T. B., and Malcata, F. X. (2011)Introduction: a journey to the world of enterococcus, In Enterococcus and safety  (Semedo-Lemsaddek, T., Crespo, M. T. B., and Tenreiro, R., Eds.), Nova Science Publishers, Hauppauge, NY, USA
  16. Ramos, O. S., and Malcata, F. X. (2011) Edible and biodegradable packaging for food storage In Food storage (Cohen, G., and Levin, C. M., Eds.), Nova Science Publishers,Hauppauge, NY, USA
  17. Rodrigues, A. F., Alves, P. M., and Coroadinha, A. S. (2011)Production of retroviral and lentiviral gene therapy vectors: challenges in the manufacturing of lipid enveloped virus, In Viral gene therapy  (Xu, K., Ed.), InTech, [S.l.]
  18. Rodrigues, M. L., Pereira, I. A. C., and Archer, M. (2011) The NrfH Cytochrome c Quinol Dehydrogenase, In Encyclopedia of Inorganic and Bioinorganic Chemistry, John Wiley &Sons, Ltd.
  19. Roldão, A., Silva, A. C., Mellado, M. C. M., Alves, P. M., and Carrondo, M. J. T. (2011) 1.47 - Viruses and virus-like particles in biotechnology: fundamentals and applications, In Comprehensive Biotechnology (Second Edition) (Murray, M.-Y., Ed.), pp 625-649, Academic Press, Burlington.
  20. Santos, H., Lamosa, P., Borges, N., Gonçalves, L. G., Pais,T., and Rodrigues, M. V. (2011) Organic compatible solutes of prokaryotes that thrive in hot environments: the importance of ionic compounds for thermostabilization, In Extremophiles handbook (Horikoshi, K., Antranikian, G., Bull, A. T., Robb, F. T., and Stetter,K. O., Eds.), pp 497-520, Springer Japan.
  21. Taga, M. E., and Xavier, K. B. (2011) Methods for analysis of bacterial autoinducer-2 production, In Current Protocols in Microbiology (Coico, R., Kowalik, T., Quarles, J. M., Stevenson, B., and Taylor, R. K., Eds.), pp 1C.1.1–1C.1.15, John Wiley & Sons, Inc., [S.l.].
  22. Teixeira, A. P., Oliveira, R., Alves, P. M., and Carrondo, M. J. T. (2011) 2.63 - Online control strategies, In Comprehensive Biotechnology (Second Edition) (Murray, M.-Y., Ed.), pp 875-882, Academic Press, Burlington.
  23. Trindade, I., Santos, D., Dalmay, T., and Fevereiro, P. (2011)Facing the environment: small RNAs and the regulation of gene expression under abiotic stress in plants, In Abiotic stress response in plants - physiological, biochemical and genetic perspectives (Shanker, A., and Venkateswarlu, B., Eds.), pp 113-136, InTech, [S.l.]
  24. Vaz Patto, M. C., Hanbury, C. D., Van Moorhem, M., Lambein,F., Ochatt, S., and Rubiales, D. (2011) Grass pea (Lathyrus sativus L.), In Genetics, genomics and breeding of cool season grain legumes (Perez de la Vega, M., Torres, A. M., Cubero, J. I.,and Kole, C. R., Eds.), pp 151-204, CRC Press / Science Publishers Inc,Enfield, NH
  25. Veiga, A. (2011) Food defence and security: the new reality, In Environmental security and ecoterrorism (Alpas, H., Berkowicz, S. M. M.,and Ermakova, I., Eds.), pp 39-54, Springer Netherlands, Dordrecht.
  26. Vicente, J. B., Carrondo, M. A., Teixeira, M., and Frazão, C.(2011) Flavodiiron Proteins: Nitric Oxide and/or Oxygen Reductases, In Encyclopedia of Inorganic and Bioinorganic Chemistry, John Wiley & Sons, Ltd.


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