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Articles indexed in Web of Science Core Collection

1. Acuna, D. E.; Berniker, M.; Fernandes, H. L.; Kording, K. P. Using psychophysics to ask if the brain samples or maximizes. Journal of Vision 2015, 15 (3), 16. doi:10.1167/15.3.7

2. Albuquerque, I. S.; Jeremias, H. F.; Chaves-Ferreira, M.; Matak-Vinkovic, D.; Boutureira, O.; Romao, C. C.; Bernardes, G. J. L. An artificial CO-releasing metalloprotein built by histidine-selective metallation. Chemical Communications 2015, 51 (19), 3993-3996. doi:10.1039/c4cc10204e

3. Alcantara, A.; Morgado, R. S.; Silvestre, S.; da Silva, J. M.; da Silva, A. B.; Fevereiro, P.; Araujo, S. S. A method to identify early-stage transgenic Medicago truncatula with improved physiological response to water deficit. Plant Cell Tissue and Organ Culture 2015, 122 (3), 605-616. doi:10.1007/s11240-015-0793-4

4. Alifragkis, A.; Cunha, J.; Pereira, J.; Fevereiro, P.; Dias, J. IDENTITY, SYNONYMIES AND HOMONYNIES OF MINOR GRAPEVINE CULTIVARS MAINTAINED IN THE PORTUGUESE AMPELOGRAPHIC COLLECTION. Ciencia E Tecnica Vitivinicola 2015, 30 (1), 43-52. doi:10.1051/ctv/20153001043

5. Almeida, A. M.; Bassols, A.; Bendixen, E.; Bhide, M.; Ceciliani, F.; Cristobal, S.; Eckersall, P. D.; Hollung, K.; Lisacek, F.; Mazzucchelli, G.; McLaughlin, M.; Miller, I.; Nally, J. E.; Plowman, J.; Renaut, J.; Rodrigues, P.; Roncada, P.; Staric, J.; Turk, R. Animal board invited review: advances in proteomics for animal and food sciences. Animal 2015, 9 (1), 1-17.doi:10.1017/s1751731114002602

6. Almeida, A. S.; Figueiredo-Pereira, C.; Vieira, H. L. A. Carbon monoxide and mitochondria-modulation of cell metabolism, redox response and cell death. Frontiers in Physiology 2015, 6, 6. doi:10.3389/fphys.2015.00033

7. Almeida, N. F.; Krezdorn, N.; Rotter, B.; Winter, P.; Rubiales, D.; Patto, M. C. V. Lathyrus sativus transcriptome resistance response to Ascochyta lathyri investigated by deepSuperSAGE analysis. Frontiers in Plant Science 2015, 6, 11. doi:10.3389/fpls.2015.00178

8. Almeida, S. T.; Nunes, S.; Paulo, A. C. S.; Faria, N. A.; de Lencastre, H.; Sa-Leao, R. Prevalence, risk factors, and epidemiology of methicillin-resistantStaphylococcus aureus carried by adults over 60 years of age. European Journal of Clinical Microbiology & Infectious Diseases 2015, 34 (3), 593-600. doi:10.1007/s10096-014-2267-8

9. Alvarez, M. S.; Esperanca, J.; Deive, F. J.; Sanroman, M. A.; Rodriguez, A. A biocompatible stepping stone for the removal of emerging contaminants. Separation and Purification Technology 2015, 153, 91-98. doi:10.1016/j.seppur.2015.08.039

10. Alves, A.; Ly, H. K.; Hildebrandt, P.; Louro, R. O.; Millo, D. Nature of the Surface-Exposed Cytochrome-Electrode Interactions in Electroactive Biofilms of Desulfuromonas acetoxidans. Journal of Physical Chemistry B 2015, 119 (25), 7968-7974. doi:10.1021/acs.jpcb.5b03419

11. Alves, M. N.; Neto, S. E.; Alves, A. S.; Fonseca, B. M.; Carrelo, A.; Pacheco, I.; Paquete, C. M.; Soares, C. M.; Louro, R. O. Characterization of the periplasmic redox network that sustains the versatile anaerobic metabolism of Shewanella oneidensis MR-1. Frontiers in Microbiology 2015, 29; 6:665, 10. doi:10.3389/fmicb.2015.00665

12. Alves, M.; Peres, C. M.; Hernandez-Mendonza, A.; Bronze, M. R.; Peres, C.; Malcata, F. X. Olive paste as vehicle for delivery of potential probiotic Lactobacillus plantarum 33. Food Research International 2015, 75, 61-70. doi:10.1016/j.foodres.2015.04.048

13. Araujo, S. S.; Beebe, S.; Crespi, M.; Delbreil, B.; Gonzalez, E. M.; Gruber, V.; Lejeune-Henaut, I.; Link, W.; Monteros, M. J.; Prats, E.; Rao, I.; Vadez, V.; Patto, M. C. V. Abiotic Stress Responses in Legumes: Strategies Used toCope with Environmental Challenges. Critical Reviews in Plant Sciences 2015, 34 (1-3), 237-280. doi:10.3389/fmicb.2015.00665

14. Balachandra, S.; de la Gandara, M. P.; Salvato, S.; Urban, T.; Parola, C.; Khalida, C.; Kost, R. G.; Evering, T. H.; Pastagia, M.; D'Orazio, B. M.; Tomasz, A.; de Lencastre, H.; Tobin, J. N. Recurrent Furunculosis Caused by a Community-Acquired Staphylococcus aureus Strain Belonging to the USA300 Clone. Microbial Drug Resistance 2015, 21 (2), 237-243. doi:10.1089/mdr.2014.0283

15. Bastos, P. D. A.; Oliveira, F. S.; Rebelo, L. P. N.; Pereiro, A. B.; Marrucho, I. M. Separation of azeotropic mixtures using high ionicity ionic liquids based on 1-ethyl-3-methylimidazolium thiocyanate. Fluid Phase Equilibria 2015, 389, 48-54. doi:10.1016/j.fluid.2015.01.011

16. Batista-Santos, P.; Duro, N.; Rodrigues, A. P.; Semedo, J. N.; Alves, P.; da Costa, M.; Graca, I.; Pais, I. P.; Scotti-Campos, P.; Lidon, F. C.; Leitao, A. E.; Pawlowski, K.; Ribeiro-Barros, A. I.; Ramalho, J. C. Is salt stress tolerance in Casuarina glauca Sieb. ex Spreng. associated with its nitrogen-fixing root-nodule symbiosis? An analysis at the photosynthetic level. Plant Physiology and Biochemistry 2015, 96, 97-109. doi:10.1016/j.plaphy.2015.07.021

17. Bernardes, C. E. S.; Mochida, T.; Lopes, J. N. C. Modeling the structure and thermodynamics of ferrocenium-based ionic liquids. Physical Chemistry Chemical Physics 2015, 17 (15), 10200-10208. doi:10.1039/c5cp00695c

18. Bernardes, C. E. S.; Shimizu, K.; Lopes, J. N. C. Solvent effects on the polar network of ionic liquid solutions. Journal of Physics-Condensed Matter 2015, 27 (19), 12. doi:10.1088/0953-8984/27/19/194116

19. Bohn, T.; McDougall, G. J.; Alegria, A.; Alminger, M.; Arrigoni, E.; Aura, A. M.; Brito, C.; Cilla, A.; El, S. N.; Karakaya, S.; Martinez-Cuesta, M. C.; Santos, C. N. Mind the gapdeficits in our knowledge of aspects impacting the bioavailability of phytochemicals and their metabolitesa position paper focusing on carotenoids and polyphenols. Molecular Nutrition & Food Research 2015, 59 (7), 1307-1323. doi:10.1002/mnfr.201400745

20. Borodina, I.; Kildegaard, K. R.; Jensen, N. B.; Blicher, T. H.; Maury, J.; Sherstyk, S.; Schneider, K.; Lamosa, P.; Herrgard, M. J.; Rosenstand, I.; Oberg, F.; Forster, J.; Nielsen, J. Establishing a synthetic pathway for high-level production of 3-hydroxypropionic acid in Saccharomyces cerevisiae via beta-alanine. Metabolic Engineering 2015, 27, 57-64. doi:10.1016/j.ymben.2014.10.003

21. Brissos, V.; Ferreira, M.; Grass, G.; Martins, L. O. Turning a Hyperthermostable Metallo-Oxidase into a Laccase by Directed Evolution. Acs Catalysis 2015, 5 (8), 4932-4941. doi:10.1021/acscatal.5b00771

22. Brito, J. A.; Denkmann, K.; Pereira, I. A. C.; Archer, M.; Dahl, C. Thiosulfate Dehydrogenase (TsdA) from Allochromatium vinosum STRUCTURAL AND FUNCTIONAL INSIGHTS INTO THIOSULFATE OXIDATION. Journal of Biological Chemistry 2015, 290 (14), 9222-9238. doi:10.1074/jbc.M114.623397

23. Brossa, R.; Pinto-Marijuan, M.; Francisco, R.; Lopez-Carbonell, M.; Chaves, M. M.; Alegre, L. Redox proteomics and physiological responses in Cistus albidus shrubs subjected to long-term summer drought followed by recovery. Planta 2015, 241 (4), 803-822.doi:10.1007/s00425-014-2221-0

24. Bugalhao, J. N.; Mota, L. J.; Franco, I. S. Bacterial nucleators: actin' on actin. Pathogens and Disease 2015, 73 (9), 11. doi:10.1093/femspd/ftv078

25. Bustos, A. Y.; de Valdez, G. F.; Raya, R.; de Almeida, A. M.; Fadda, S.; Taranto, M. P. Proteomic analysis of the probiotic Lactobacillus reuteri CRL1098 reveals novel tolerance biomarkers to bile acid-induced stress. Food Research International 2015, 77, 599-607.doi:10.1016/j.foodres.2015.10.001

26. Cabrita, P.; Trigo, M. J.; Ferreira, R. B.; Brito, L. Differences in the Expression of Cold Stress-Related Genes and in the Swarming Motility Among Persistent and Sporadic Strains of Listeria monocytogenes. Foodborne Pathogens and Disease 2015, 12 (7), 576-584. doi:10.1089/fpd.2014.1918

27. Caetano, S. M.; Menezes, R.; Amaral, C.; Rodrigues-Pousada, C.; Pimentel, C. Repression of the Low Affinity Iron Transporter Gene FET4 A NOVEL MECHANISM AGAINST CADMIUM TOXICITY ORCHESTRATED BY YAP1 VIA ROX1. Journal of Biological Chemistry 2015, 290 (30), 18584-18595.doi:10.1074/jbc.M114.600742

28. Canas, S.; Assuncao, M.; Brazao, J.; Zanol, G.; Eiras-Dias, J. E. Phenolic Compounds Involved in Grafting Incompatibility of Vitis spp: Development and Validation of an Analytical Method for their Quantification. Phytochemical Analysis 2015, 26 (1), 1-7.doi:10.1002/pca.2526

29. Cardoso, B. D.; Royo, B.; Calhorda, M. J. Preference for sulfoxide S- or O-bonding to 3d transition metals - DFT insights. Journal of Organometallic Chemistry 2015, 792, 167-176. doi:10.1016/j.jorganchem.2015.04.022

30. Cardoso, J. M. S.; Lopes, R.; Royo, B. Dehydrogenative silylation of alcohols catalysed by half-sandwich iron N-heterocyclic carbene complexes. Journal of Organometallic Chemistry 2015, 775, 173-177.doi:10.1016/j.jorganchem.2014.06.005

31. Carocha, V.; Soler, M.; Hefer, C.; Cassan-Wang, H.; Fevereiro, P.; Myburg, A. A.; Paiva, J. A. P.; Grima-Pettenati, J. Genome-wide analysis of the lignin toolbox of Eucalyptus grandis. New Phytologist 2015, 206 (4), 1297-1313.doi:10.1111/nph.13313

32. Carvalheda, C. A.; Campos, S. R. R.; Baptista, A. M. The Effect of Membrane Environment on Surfactant Protein C Stability Studied by Constant-pH Molecular Dynamics. Journal of Chemical Information and Modeling 2015, 55 (10), 2206-2217. doi:10.1021/acs.jcim.5b00076

33. Carvalho, A.; Graca, C.; Carocha, V.; Pera, S.; Lousada, J. L.; Lima-Brito, J.; Paiva, J. A. P. An improved total RNA isolation from secondary tissues of woody species for coding and non-coding gene expression analyses. Wood Science and Technology 2015, 49 (3), 647-658.doi:10.1007/s00226-015-0709-9

34. Carvalho, F.; Atilano, M. L.; Pombinho, R.; Covas, G.; Gallo, R. L.; Filipe, S. R.; Sousa, S.; Cabanes, D. L-Rhamnosylation of Listeria monocytogenes Wall Teichoic Acids Promotes Resistance to Antimicrobial Peptides by Delaying Interaction with the Membrane. Plos Pathogens 2015, 11 (5), 29. doi:10.1371/journal.ppat.1004919

35. Carvalho, H. F.; Roque, A. C. A.; Iranzo, O.; Branco, R. J. F. Comparison of the Internal Dynamics of Metalloproteases Provides New Insights on Their Function and Evolution. Plos One 2015, 10 (9), 22. doi:10.1371/journal.pone.0138118

36. Castro, R.; Fernandes, P.; Laske, T.; Sousa, M.; Genzel, Y.; Scharfenberg, K.; Alves, P.; Coroadinha, A. Production of canine adenovirus type 2 in serum-free suspension cultures of MDCK cells. Applied Microbiology and Biotechnology 2015, 99 (17), 7059-7068. doi:10.1007/s00253-015-6636-8

37. Ceccaldi, P.; Marques, M. C.; Fourmond, V.; Pereira, I. C.; Leger, C. Oxidative inactivation of NiFeSe hydrogenase. Chemical Communications 2015, 51 (75), 14223-14226. doi:10.1039/c5cc05930e

38. Chaves-Ferreira, M.; Albuquerque, I. S.; Matak-Vinkovic, D.; Coelho, A. C.; Carvalho, S. M.; Saraiva, L. M.; Romao, C. C.; Bernardes, G. J. L. Spontaneous CO Release from Ru-II(CO)(2)-Protein Complexes in Aqueous Solution, Cells, and Mice. Angewandte Chemie-International Edition 2015, 54 (4), 1172-1175. doi:10.1002/anie.201409344

39. Clarke, O. B.; Tomasek, D.; Jorge, C. D.; Dufrisne, M. B.; Kim, M.; Banerjee, S.; Rajashankar, K. R.; Shapiro, L.; Hendrickson, W. A.; Santos, H.; Mancia, F. Structural basis for phosphatidylinositol-phosphate biosynthesis. Nature Communications 2015, 6, 11. doi:10.1038/ncomms9505

40. Claudio, A. F. M.; Neves, M. C.; Shimizu, K.; Lopes, J. N. C.; Freire, M. G.; Coutinho, J. A. P. The magic of aqueous solutions of ionic liquids: ionic liquids as a powerful class of catanionic hydrotropes. Green Chemistry 2015, 17 (7), 3948-3963. doi:10.1039/c5gc00712g

41. Conceicao, T.; Coelho, C.; de Lencastre, H.; Aires-de-Sousa, M. Frequent occurrence of oxacillin-susceptible mecA-positive Staphylococcus aureus (OS-MRSA) strains in two African countries. Journal of Antimicrobial Chemotherapy 2015, 70 (12), 3200-3204.doi:10.1093/jac/dkv261

42. Conceicao, T.; Coelho, C.; Silva, I. S.; de Lencastre, H.; Aires-de-Sousa, M. Staphylococcus aureus in former Portuguese colonies from Africa and the Far East: missing data to help fill the world map. Clinical Microbiology and Infection 2015, 21 (9): 842.e1-842.e10.doi:10.1016/j.cmi.2015.05.010

43. Conde, A.; Regalado, A.; Rodrigues, D.; Costa, J. M.; Blumwald, E.; Chaves, M. M.; Geros, H. Polyols in grape berry: transport and metabolic adjustments as a physiological strategy for water-deficit stress tolerance in grapevine. Journal of Experimental Botany 2015, 66 (3), 889-906.doi:10.1093/jxb/eru446

44. Correia, M.; Snabe, T.; Thiagarajan, V.; Petersen, S. B.; Campos, S. R. R.; Baptista, A. M.; Neves-Petersen, M. T. Photonic Activation of Plasminogen Induced by Low Dose UVB. Plos One 2015, 10 (1), 34. doi:10.1371/journal.pone.0116737

45. Correia, V. G.; Ferraria, A. M.; Pinho, M. G.; Aguiar-Ricardo, A. Antimicrobial Contact-Active Oligo(2-oxazoline)s-Grafted Surfaces for Fast Water Disinfection at the Point-of-Use. Biomacromolecules 2015, 16 (12), 3904-3915. doi:10.1021/acs.biomac.5b01243

46. Costa, N. L.; Carlson, H. K.; Coates, J. D.; Louro, R. O.; Paquete, C. M. Heterologous expression and purification of a multiheme cytochrome from a Gram-positive bacterium capable of performing extracellular respiration. Protein Expression and Purification 2015, 111, 48-52. doi:10.1016/j.pep.2015.03.007

47. Craveiro, S.; Alves-Barroco, C.; Crespo, M. T. B.; Barreto, A. S.; Semedo-Lemsaddek, T. Aeromonas biofilm on stainless steel: efficiency of commonly used disinfectants. International Journal of Food Science and Technology 2015, 50 (4), 851-856. doi:10.1111/ijfs.12731

48. Cunha, B.; Aguiar, T.; Silva, M. M.; Silva, R. J. S.; Sousa, M. F. Q.; Pineda, E.; Peixoto, C.; Carrondo, M. J. T.; Serra, M.; Alves, P. M. Exploring continuous and integrated strategies for the up- and downstream processing of human mesenchymal stem cells. Journal of Biotechnology 2015, 213, 97-108. doi:10.1016/j.jbiotec.2015.02.023

49. Cunha, B.; Peixoto, C.; Silva, M. M.; Carrondo, M. J. T.; Serra, M.; Alves, P. M. Filtration methodologies for the clarification and concentration of human mesenchymal stem cells. Journal of Membrane Science 2015, 478, 117-129.doi:10.1016/j.memsci.2014.12.041

50. Cunha, J.; Zinelabidine, L. H.; Teixeira-Santos, M.; Brazao, J.; Fevereiro, P.; Martinez-Zapater, J. M.; Ibanez, J.; Eiras-Dias, J. E. Grapevine cultivar 'Alfrocheiro' or 'Brunal' plays a primary role in the relationship among Iberian grapevines. Vitis 2015, 54, 59-65.

51. da Costa, G.; Ribeiro-Silva, C.; Ribeiro, R.; Gilberto, S.; Gomes, R. A.; Ferreira, A.; Mateus, E.; Barroso, E.; Coelho, A. V.; Freire, A. P.; Cordeiro, C. Transthyretin Amyloidosis: Chaperone Concentration Changes and Increased Proteolysis in the Pathway to Disease. Plos One 2015, 10 (7), 17. doi:10.1371/journal.pone.0125392

52. da Costa, M.; Duro, N.; Batista-Santos, P.; Ramalho, J. C.; Ribeiro-Barros, A. I. Validation of candidate reference genes for qRT-PCR studies in symbiotic and non-symbiotic Casuarina glauca Sieb. ex Spreng. under salinity conditions. Symbiosis 2015, 66 (1), 21-35. doi:10.1007/s13199-015-0330-6

53. da Silva, S. M.; Amaral, C.; Neves, S. S.; Santos, C.; Pimentel, C.; Rodrigues-Pousada, C. An HcpR paralog of Desulfovibrio gigas provides protection against nitrosative stress. Febs Open Bio 2015, 5, 594-604. doi:10.1016/j.fob.2015.07.001

54. de Groot, N. S.; Gomes, R. A.; Villar-Pique, A.; Babu, M. M.; Coelho, A. V.; Ventura, S. Proteome response at the edge of protein aggregation. Open Biology 2015, 5 (2), 9.doi:10.1098/rsob.140221

55. de la Gandara, M. P.; Garay, J. A. R.; Mwangi, M.; Tobin, J. N.; Tsang, A.; Khalida, C.; D'Orazio, B.; Kost, R. G.; Leinberger-Jabari, A.; Coffran, C.; Evering, T. H.; Coller, B. S.; Balachandra, S.; Urban, T.; Parola, C.; Salvato, S.; Jenks, N.; Wu, D. R.; Burgess, R.; Chung, M.; de Lencastre, H.; Tomasz, A. Molecular Types of Methicillin-Resistant Staphylococcus aureus and Methicillin-Sensitive S. aureus Strains Causing Skin and Soft Tissue Infections and Nasal Colonization, Identified in Community Health Centers in New York City. Journal of Clinical Microbiology 2015, 53 (8), 2648-2658. doi:10.1128/jcm.00591-15

56. Deive, F. J.; Ruivo, D.; Rodrigues, J. V.; Gomes, C. M.; Sanroman, M. A.; Rebelo, L. P. N.; Esperanca, J.; Rodriguez, A. On the hunt for truly biocompatible ionic liquids for lipase-catalyzed reactions. Rsc Advances 2015, 5 (5), 3386-3389. doi:10.1039/c4ra15021j

57. Dias, J. C.; Lopes, A. C.; Magalhaes, B.; Botelho, G.; Silva, M. M.; Esperanca, J.; Lanceros-Mendez, S. High performance electromechanical actuators based on ionic liquid/poly(vinylidene fluoride). Polymer Testing 2015, 48, 199-205.doi:10.1016/j.polymertesting.2015.10.012

58. Diniz, M. S.; Salgado, R.; Pereira, V. J.; Carvalho, G.; Oehmen, A.; Reis, M. A. M.; Noronha, J. P. Ecotoxicity of ketoprofen, diclofenac, atenolol and their photolysis byproducts in zebrafish (Danio rerio). Science of the Total Environment 2015, 505, 282-289. doi:10.1016/j.scitotenv.014.09.103

59. do Carmo, C. S.; Nunes, A. N.; Serra, A. T.; Ferreira-Dias, S.; Nogueira, I.; Duarte, M. M. A way to prepare a liposoluble natural pink colourant. Green Chemistry 2015, 17 (3), 1510-1518. doi:10.1039/c4gc01801j

60. Domingues, S.; Moreira, R. N.; Andrade, J. M.; dos Santos, R. F.; Barria, C.; Viegas, S. C.; Arraiano, C. M. The role of RNase R in trans-translation and ribosomal quality control. Biochimie 2015, 114, 113-118. doi:10.1016/j.biochi.2014.12.012

61. Dressaire, C.; Moreira, R. N.; Barahona, S.; de Matos, A. P. A.; Arraiano, C. M. BolA Is a Transcriptional Switch That Turns Off Motility and Turns On Biofilm Development. Mbio 2015, 6 (1), 13. doi:10.1128/mBio.02352-14

62. Duc, G.; Agrama, H.; Bao, S. Y.; Berger, J.; Bourion, V.; De Ron, A. M.; Gowda, C. L. L.; Mikic, A.; Millot, D.; Singh, K. B.; Tullu, A.; Vandenberg, A.; Patto, M. C. V.; Warkentin, T. D.; Zong, X. X. Breeding Annual Grain Legumes for Sustainable Agriculture: New Methods to Approach Complex Traits and Target New Cultivar Ideotypes. Critical Reviews in Plant Sciences 2015, 34 (1-3), 381-411. doi:10.1080/07352689.2014.898469

63. Estacio, S. G.; Leal, S. S.; Cristovao, J. S.; Faisca, P. F. N.; Gomes, C. M. Calcium binding to gatekeeper residues flanking aggregation-prone segments underlies non-fibrillar amyloid traits in superoxide dismutase 1 (SOD1). Biochimica Et Biophysica Acta-Proteins and Proteomics 2015, 1854 (2), 118-126.doi:10.1016/j.bbapap.2014.11.005

64. Fadda, S.; Almeida, A. M. Proteomics in Argentina - limitations and future perspectives: A special emphasis on meat proteomics. Proteomics 2015, 15 (21), 3676-3687. doi:10.1002/pmic.201500185

65. Ferlizza, E.; Campos, A.; Neagu, A.; Cuoghi, A.; Bellei, E.; Monari, E.; Dondi, F.; Almeida, A. M.; Isani, G. The effect of chronic kidney disease on the urine proteome in the domestic cat (Felis catus). Veterinary Journal 2015, 204 (1), 73-81. doi:10.1016/j.tvjl.2015.01.023

66. Fernandes, C. G.; Placido, D.; Lousa, D.; Brito, J. A.; Isidro, A.; Soares, C. M.; Pohl, J.; Carrondo, M. A.; Archer, M.; Henriques, A. O. Structural and Functional Characterization of an Ancient Bacterial Transglutaminase Sheds Light on the Minimal Requirements for Protein Cross-Linking. Biochemistry 2015, 54 (37), 5723-5734. doi:10.1021/acs.biochem.5b00661

67. Fernandes, P.; Almeida, A. I.; Kremer, E. J.; Alves, P. M.; Coroadinha, A. S. Canine helper-dependent vectors production: implications of Cre activity and co-infection on adenovirus propagation. Scientific Reports 2015, 5, 8. doi:10.1038/srep09135

68. Fernandes, P.; Simao, D.; Guerreiro, M. R.; Kremer, E. J.; Coroadinha, A. S.; Alves, P. M. Impact of adenovirus life cycle progression on the generation of canine helper-dependent vectors. Gene Therapy 2015, 22 (1), 40-49.doi:10.1038/gt.2014.92

69. Ferraz, R.; Costa-Rodrigues, J.; Fernandes, M. H.; Santos, M. M.; Marrucho, I. M.; Rebelo, L. P. N.; Prudencio, C.; Noronha, J. P.; Petrovski, Z.; Branco, L. C. Antitumor Activity of Ionic Liquids Based on Ampicillin. Chemmedchem 2015, 10 (9), 1480-1483. doi:10.1002/cmdc.201500142

70. Ferreira, A. M.; Marques, A. T.; Bhide, M.; Cubric-Curik, V.; Hollung, K.; Knight, C. H.; Raundrup, K.; Lippolis, J.; Palmer, M.; Sales-Baptista, E.; Araujo, S. S.; de Almeida, A. M. Sequence Analysis of Bitter Taste Receptor Gene Repertoires in Different Ruminant Species. Plos One 2015, 10 (6), 11.doi:10.1371/journal.pone.0124933

71. Ferreira, L. J.; Azevedo, V.; Maroco, J.; Oliveira, M. M.; Santos, A. P. Salt Tolerant and Sensitive Rice Varieties Display Differential Methylome Flexibility under Salt Stress. Plos One 2015, 10 (5), 19. doi:10.1371/journal.pone.0124060

72. Ferreira, R. T.; Menezes, R. A.; Rodrigues-Pousada, C. E4-Ubiquitin ligase Ufd2 stabilizes Yap8 and modulates arsenic stress responses independent of the U-box motif. Biology Open 2015, 4 (9), 1122-1131. doi:10.1242/bio.010405

73. Fonseca, C.; Planchon, S.; Serra, T.; Chander, S.; Saibo, N. J. M.; Renaut, J.; Oliveira, M. M.; Batista, R. In vitro culture may be the major contributing factor for transgenic versus nontransgenic proteomic plant differences. Proteomics 2015, 15 (1), 124-134.doi:10.1002/pmic.201400018

74. Fortes, A. M.; Teixeira, R. T.; Agudelo-Romero, P. Complex Interplay of Hormonal Signals during Grape Berry Ripening. Molecules 2015, 20 (5), 9326-9343. doi:10.3390/molecules20059326

75. Fragoso, A.; Carvalho, T.; Rousselot-Pailley, P.; dos Santos, M. M. C.; Delgado, R.; Iranzo, O. Effect of the Peptidic Scaffold in Copper(II) Coordination and the Redox Properties of Short Histidine-Containing Peptides. Chemistry-a European Journal 2015, 21 (37), 13100-13111. doi:10.1002/chem.201501715

76. Franca, R. D. G.; Vieira, A.; Mata, A. M. T.; Carvalho, G. S.; Pinheiro, H. M.; Lourenco, N. D. Effect of an azo dye on the performance of an aerobic granular sludge sequencing batch reactor treating a simulated textile wastewater. Water Research 2015, 85, 327-336. doi:10.1016/j.watres.2015.08.043

77. Franco, C.; Hess, S. Recent proteomic advances in developmental, regeneration, and cancer governing signaling pathways. Proteomics 2015, 15 (5-6), 1014-1025. doi:10.1002/pmic.201400368

78. Gautam, S.; Kim, T.; Shoda, T.; Sen, S.; Deep, D.; Luthra, R.; Ferreira, M. T.; Pinho, M. G.; Spiegel, D. A. An Activity-Based Probe for Studying Crosslinking in Live Bacteria. Angewandte Chemie-International Edition 2015, 54 (36), 10492-10496.doi:10.1002/anie.201503869

79. Gomar-Alba, M.; Amaral, C.; Artacho, A.; D'Auria, G.; Pimentel, C.; Rodrigues-Pousada, C.; del Olmo, M. L. The C-terminal region of the Hot1 transcription factor binds GGGACAAA-related sequences in the promoter of its target genes. Biochimica Et Biophysica Acta-Gene Regulatory Mechanisms 2015, 1849 (12), 1385-1397. doi:10.1016/j.bbagrm.2015.10.007

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229. Sousa, M. F. Q.; Silva, M. M.; Roldao, A.; Alves, P. M.; Serra, M.; Giroux, D.; Hashimura, Y.; Wesselschmidt, R.; Lee, B.; Carrondo, M. J. T. Production of Oncolytic Adenovirus and Human Mesenchymal Stem Cells in a Single-Use, Vertical-Wheel Bioreactor System: Impact of Bioreactor Design on Performance of Microcarrier-Based Cell Culture Processes. Biotechnology Progress 2015, 31 (6), 1600-1612.  doi:10.1002/btpr.2158

230. Sowmiah, S.; Veiros, L. F.; Esperanca, J.; Rebelo, L. P. N.; Afonso, C. A. M. Organocatalyzed One-Step Synthesis of Functionalized N-AlkylPyridinium Salts from Biomass Derived 5-Hydroxymethylfurfural. Organic Letters 2015, 17 (21), 5244-5247. doi:10.1021/acs.orglett.5b02573

231. Sturm, G.; Richter, K.; Doetsch, A.; Heide, H.; Louro, R. O.; Gescher, J. A dynamic periplasmic electron transfer network enables respiratory flexibility beyond a thermodynamic regulatory regime. Isme Journal 2015, 9 (8), 1802-1811. doi:10.1038/ismej.2014.264

232. Suter-Dick, L.; Alves, P. M.; Blaauboer, B. J.; Bremm, K. D.; Brito, C.; Coecke, S.; Flick, B.; Fowler, P.; Hescheler, J.; Ingelman-Sundberg, M.; Jennings, P.; Kelm, J. M.; Manou, I.; Mistry, P.; Moretto, A.; Roth, A.; Stedman, D.; van de Water, B.; Beilmann, M. Stem Cell-Derived Systems in Toxicology Assessment. Stem Cells and Development 2015, 24 (11), 1284-1296. doi:10.1089/scd.2014.0540

233. Sweredoski, M. J.; Moradian, A.; Raedle, M.; Franco, C.; Hess, S. High Resolution Parallel Reaction Monitoring with Electron Transfer Dissociation for Middle-Down Proteomics. Analytical Chemistry 2015, 87 (16), 8360-8366.  doi:10.1021/acs.analchem.5b01542

234. Tariq, M.; Shimizu, K.; Esperanca, J.; Lopes, J. N. C.; Rebelo, L. P. N. Viscosity minima in binary mixtures of ionic liquids plus molecular solvents. Physical Chemistry Chemical Physics 2015, 17 (20), 13480-13494.   doi:10.1039/c5cp01563d

235. Tavares, A. C.; Fernandes, P. B.; Carballido-Lopez, R.; Pinho, M. G. MreC and MreD Proteins Are Not Required for Growth of Staphylococcus aureus. Plos One 2015, 10 (10), 17.doi:10.1371/journal.pone.0140523

236. Tavares, S.; Wirtz, M.; Beier, M. P.; Bogs, J.; Hell, R.; Amancio, S. Characterization of the serine acetyltransferase gene family of Vitis vinifera uncovers differences in regulation of OAS synthesis in woody plants. Frontiers in Plant Science 2015, 6, 14. doi:10.3389/fpls.2015.00074

237. Teixeira, F. S.; Vieira, N. S. M.; Cortes, O. A.; Araujo, J. M. M.; Marrucho, I. M.; Rebelo, L. P. N.; Pereiro, A. B. Phase equilibria and surfactant behavior of fluorinated ionic liquids with water. Journal of Chemical Thermodynamics 2015, 82, 99-107. doi:10.1016/j.jct.2014.10.021

238. Terrasso, A. P.; Pinto, C.; Serra, M.; Filipe, A.; Almeida, S.; Ferreira, A. L.; Pedroso, P.; Brito, C.; Alves, P. M. Novel scalable 3D cell based model for in vitro neurotoxicity testing: Combining human differentiated neurospheres with gene expression and functional endpoints. Journal of Biotechnology 2015, 205, 82-92. doi:10.1016/j.jbiotec.2014.12.011

239. Thompson, J. A.; Oliveira, R. A.; Djukovic, A.; Ubeda, C.; Xavier, K. B. Manipulation of the Quorum Sensing Signal AI-2 Affects the Antibiotic-Treated Gut Microbiota. Cell Reports 2015, 10 (11), 1861-1871.  doi:10.1016/j.celrep.2015.02.049

240. Todorovic, S.; Hildebrandt, P.; Martins, L. O. Surface enhanced resonance Raman detection of a catalytic intermediate of DyP-type peroxidase. Physical Chemistry Chemical Physics 2015, 17 (18), 11954-11957. doi:10.1039/c5cp01283j 

241. Tome, L. C.; Gouveia, A. S. L.; Freire, C. S. R.; Mecerreyes, D.; Marrucho, I. M. Polymeric ionic liquid-based membranes: Influence of polycation variation on gas transport and CO2 selectivity properties. Journal of Membrane Science 2015, 486, 40-48. doi:10.1016/j.memsci.2015.03.026

242. Tome, L. C.; Isik, M.; Freire, C. S. R.; Mecerreyes, D.; Marrucho, I. M. Novel pyrrolidinium-based polymeric ionic liquids with cyano counter-anions: High performance membrane materials for post-combustion CO2 separation. Journal of Membrane Science 2015, 483, 155-165. doi:10.1016/j.memsci.2015.02.020

243. Tome, L. C.; Silva, N.; Soares, H. R.; Coroadinha, A. S.; Sadocco, P.; Marrucho, I. M.; Freire, C. S. R. Bioactive transparent films based on polysaccharides and cholinium carboxylate ionic liquids. Green Chemistry 2015, 17 (8), 4291-4299. doi:10.1039/c5gc00416k

244. Towler, B. P.; Jones, C. I.; Viegas, S. C.; Apura, P.; Waldron, J. A.; Smalley, S. K.; Arraiano, C. M.; Newbury, S. F. The 3 '-5 ' exoribonuclease Dis3 regulates the expression of specific microRNAs in Drosophila wing imaginal discs. Rna Biology 2015, 12 (7), 728-741. doi:10.1080/15476286.2015.1040978

245. Varela, A.; Martins, C.; Nunez, O.; Martins, I.; Houbraken, J.; Martins, T. M.; Leitao, M. C.; McLellan, I.; Vetter, W.; Galceran, M. T.; Samson, R. A.; Hursthouse, A.; Pereira, C. S. Understanding fungal functional biodiversity during the mitigation of environmentally dispersed pentachlorophenol in cork oak forest soils. Environmental Microbiology 2015, 17 (8), 2922-2934. doi:10.1111/1462-2920.12837

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247. Victor, B. L.; Lousa, D.; Antunes, J. M.; Soares, C. M. Self-Assembly Molecular Dynamics Simulations Shed Light into the Interaction of the Influenza Fusion Peptide with a Membrane Bilayer. Journal of Chemical Information and Modeling 2015, 55 (4), 795-805. doi:10.1021/ci500756v

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Articles not indexed in Web of Science Core Collection:

  • Gomes, J., Gomes-Alves, P., Carvalho, S.B., Peixoto, C., Alves, P.M., Altevogt, P., Costa, J. (2015) Extracellular Vesicles from Ovarian Carcinoma Cells Display Specific Glycosignatures. Biomolecules. 5,  1741-61 doi:10.3390/biom5031741
  • Kazana V, Tsourgiannis L, Iakovoglou V, Stamatiou C, Alexandrov A, Araújo S, Bogdan S, Bozic G, Brus R, Bossinger G, Boutsimea A, Celepirović N, Cvrčková H, Fladung M, Ivankovic M, Kazaklis A, Koutsona P, Luthar Z, Máchová P, Malá J, Mara K, Mataruga M, Moravcikova J, Paffetti D, Paiva JAP, Raptis D, Sanchez C, Sharry S, Salaj T, Šijačić-Nikolić M, Tel-Zur N, Tsvetkov I, Vettori C, Vidal N (2015). Public attitudes towards the use of transgenic forest trees: across-country pilot survey. iForest 9: 344-353– doi:10.3832/ifor1441-00
  • Matias PM, Baek SH, Bandeiras TM, Dutta A, Houry WA, Llorca O and Rosenbaum J (2015) The AAA+ proteins Pontin and Reptin enter adult age: from understanding their basic biology to the identification of selective inhibitors. Front. Mol. Biosci. 2:17. doi: 10.3389/fmolb.2015.00017
  • Menezes R, Tenreiro S, Macedo D, Santos CN & Outeiro TO (2015). From the baker to the bedside: yeast models of Parkinson's disease. Microbial Cell 2:262; doi: 10.15698/mic2015.08.219


  • Hernâni Gerós, Maria Manuela Chaves, Hipolito Medrano Gil, Serge Delrot (eds). (2015) Grapevine in a Changing Environment: A Molecular and Ecophysiological Perspective. Wiley-Blackwell. ISBN: 978-1-118-73605-0

Book Chapters:

  • Almeida NF, Rubiales D, Vaz Patto MC (2015) Grass pea. In Grain Legumes, Series Handbook of Plant Breeding (de Ron A.M., Ed.) . Chapter VIII pp. 251-265 (Springer).
  • Carlos C. Romão and Helena L. A. Vieira (2015). Metal Carbonyl Prodrugs: CO Delivery and Beyond. In Bioorganometallic Chemistry: Applications in Drug Discovery Biocatalysis, and Imaging. (G. Jaouen, M. Salmain eds.). Chapter VI.(Wiley).
  • Goncalves, V.S.S., Duarte, C.M.M. (2015). Development of Hybrid Structured Particles Prepared through PGSS® Process. In Supercritical Fluid Nanotechnology-Advances and Applications in Composites and Hybrid Nanomaterials.(Pascual, C.D.  Subra-Paternault, P. eds.). Chapter VII (Pan Stanford).
  • L.C. Tomé and I.M. Marrucho (2015). New Perspectives on Gas Separation using Poly(ionic liquid)s. In Applications of Ionic Liquids in Polymer Science and Technology (D. Mercerreyes Ed.). pp 267-295 (Springer).
  • Marriott AS, António C, and Thomas-Oates J (2015). Application of Carbonaceous Materials in Separation Science. In Porous Carbon Materials from Sustainable Precursors (RJ White Ed.). Chapter IV (RSC).
  • Melo, Ana MP, Emma B. Gutiérrez Cirlos, and Miguel Teixeira. (2015) Unravelling New Metabolic Pathways: Supramolecular Organization of Aerobic Bacteria Respiratory Chains. In Redox Proteins in Supercomplexes and Signalosomes.(Ricardo O. Louro and Irene Diaz-Moreno eds). pp 217-238 (CRC Press) .
  • Mendes, S, Robalo, MP, Martins, LO. 2015 (2015). Bacterial Enzymes and Multi-Enzymatic Systems for Cleaning-up Dyes from the Environment in Microbial Degradation of Synthetic Dyes in Waste Waters (Shree Nath Singh Ed.) . pp 27-55 (Springer).
  • M. Tariq, K. Shimizu, B. Saramago, L. P. N. Rebelo, J. N. Canongia Lopes (2015). Ionic liquids in bulk and at interface: Self-aggregation, interfacial tension and adsorption. In Ionic Liquid based Surfactant Science: Formulation, Characterization and Applications. (Bidyut K. Paul, Satya P. Moulik eds.). Chapter V. (Wiley).
  • Santos AP, Abranches R, Oliveira MM and Shaw P. (2015). Plasticity of Chromatin Organization in the Plant Interphase Nucleus. In Nuclear Functions in Plant Transcription, Signaling and Development (Olga Pontes , Hailing Jin eds.). Chapter IV (Springer). 

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