2008-v2

Articles

1. Abranches R., Arcalis E., Marcel S., Altmann F., Ribeiro-Pedro M., Rodriguez J. and Stoger E. (2008). "Functional specialization of Medicago truncatula leaves and seeds does not affect the subcellular localization of a recombinant protein." Planta 227(3): 649-658. DOI

2. Agapito F., Nunes P. A., Cabral B. J. C., dos Santos R. A. B. and Simoes J. A. M. (2008). "Energetic differences between the five- and six-membered ring hydrocarbons: Strain energies in the parent and radical molecules." Journal of Organic Chemistry73(16): 6213-6223. DOI

3. Ahmed J. S., Oliva A. G. and Seitzer U. (2008). "Animal health: Harmonisation and distribution of pathogen detection and differentiation tools." Transboundary and Emerging Diseases 55(5-6): 187-189. DOI

4. Aires-De-Sousa M., Correia B. and de Lencastre H. (2008). "Changing patterns in frequency of recovery of five methicillin-resistant Staphylococcus aureus clones in Portuguese hospitals: Surveillance over a 16-year period." Journal of Clinical Microbiology 46(9): 2912-2917. DOI

5. Ali A., Tariq M. and Nabi F. (2008). "Experimental and predicted viscosities of binary mixtures of benzene and chloroalkanes at different temperatures using Isdale's group contribution method." Indian Journal of Pure & Applied Physics 46(8): 545-551.

6. Andrade J. M. and Arraiano C. M. (2008). "PNPase is a key player in the regulation of small RNAs that control the expression of outer membrane proteins." Rna-a Publication of the Rna Society 14(3): 543-551. DOI

7. Antonio C., Pinheiro C., Chaves M. M., Ricardo C. P., Ortuno M. F. and Thomas-Oates J. (2008). "Analysis of carbohydrates in Lupinus albus stems on imposition of water deficit, using porous graphitic carbon liquid chromatography-electrospray ionization mass spectrometry." Journal of Chromatography A 1187(1-2): 111-118. DOI

8. Aragao D., Mitchell E. P., Frazao C. F., Carrondo M. A. and Lindley P. F. (2008). "Structural and functional relationships in the hybrid cluster protein family: structure of the anaerobically purified hybrid cluster protein from Desulfovibrio vulgaris at 1.35 angstrom resolution." Acta Crystallographica Section D-Biological Crystallography 64: 665-674. DOI

9. Bandeiras T. M., Hillig R. C., Matias P. M., Eberspaecher U., Fanghanel J., Thomaz M., Miranda S., Crusius K., Puetter V., Amstutz P., Gulotti-Georgieva M., Binz H. K., Holz C., Schmitz A. A. P., Lang C., Donner P., Egner U., Carrondo M. A. and Muller-Tiemann B. (2008). "Structure of wild-type Plk-1 kinase domain in complex with a selective DARPin." Acta Crystallographica Section D-Biological Crystallography 64: 339-353. DOI

10. Barbas A., Matos R. G., Amblar M., Lopez-Vinas E., Gomez-Puertas P. and Arraiano C. M. (2008). "New insights into the mechanism of RNA degradation by ribonuclease II - Identification of the residue responsible for setting the RNase II end product." Journal of Biological Chemistry 283(19): 13070-13076. DOI

11. Barreiros L., Fernandes A., Ferreira A. C. S., Pereira H., Bastos M., Manaia C. M. and Nunes O. C. (2008). "New insights into a bacterial metabolic and detoxifying association responsible for the mineralization of the thiocarbamate herbicide molinate." Microbiology-Sgm 154: 1038-1046. DOI

12. Bartels M. D., Nanuashvili A., Boye K., Rohde S. M., Jashiashvili N., Faria N. A., Kereselidze M., Kharebava S. and Westh H. (2008). "Methicillin-resistant Staphylococcus aureus in hospitals in Tbilisi, the Republic of Georgia, are variants of the Brazilian clone." European Journal of Clinical Microbiology & Infectious Diseases 27(8): 757-760. DOI

13. Batista A. P., Kletzin A. and Pereira M. M. (2008). "The dihydrolipoamide dehydrogenase from the crenarchaeon Acidianus ambivalens." Fems Microbiology Letters 281(2): 147-154. DOI

14. Batista L., Monteiro S., Loureiro V. B., Teixeira A. R. and Ferreira R. B. (2009). "The complexity of protein haze formation in wines." Food Chemistry 112(1): 169-177. DOI

15. Batista R., Saibo N., Lourenco T. and Oliveira M. M. (2008). "Microarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion." Proceedings of the National Academy of Sciences of the United States of America 105(9): 3640-3645. DOI

16. Blesic M., Lopes A., Melo E., Petrovski Z., Plechkova N. V., Lopes J. N. C., Seddon K. R. and Rebelo L. P. N. (2008). "On the self-aggregation and fluorescence quenching aptitude of surfactant ionic liquids." Journal of Physical Chemistry B 112(29): 8645-8650. DOI

17. Bohn A. and Garcia-Ojalvo J. (2008). "Synchronization of coupled biological oscillators under spatially heterogeneous environmental forcing." Journal of Theoretical Biology 250(1): 37-47. DOI

18. Braga M. E. M., Pato M. T. V., Silva H., Ferreira E. I., Gil M. H., Duarte C. M. M. and De Sousa H. C. (2008). "Supercritical solvent impregnation of ophthalmic drugs on chitosan derivatives." Journal of Supercritical Fluids 44(2): 245-257. DOI

19. Braschler T., Demierre N., Nascimento E., Silva T., Oliva A. G. and Renaud P. (2008). "Continuous separation of cells by balanced dielectrophoretic forces at multiple frequencies." Lab on a Chip 8(2): 280-286. DOI

20. Bravo M. N., Feliciano R., Silva S., Coelho A. V., Boas L. V. and Bronze M. R. (2008). "Analysis of trans-resveratrol: Comparison of methods and contents in Muscatel fortified wines from Setubal region in Portugal." Journal of Food Composition and Analysis 21(8): 634-643. DOI

21. Brito C., Kandzia S., Graca I., Conradt H. S. and Costa J. (2008). "Human fucosyltransferase IX: Specificity towards N-linked glycoproteins and relevance of the cytoplasmic domain in intra-Golgi localization." Biochimie 90(9): 1279-1290. DOI

22. Caeiro A., Ramos P., Teixeira A. and Ferreira R. (2008). "The ubiquitin/proteasome pathway from Lemna minor subjected to heat shock." Biologia Plantarum 52(4): 695-702. DOI

23. Caldeira A. T., Feio S. S., Arteiro J. M. S., Coelho A. V. and Roseiro J. C. (2008). "Environmental dynamics of Bacillus amyloliquefaciens CCMI 1051 antifungal activity under different nitrogen patterns." Journal of Applied Microbiology 104(3): 808-816. DOI

24. Carmo M., Panet A., Carrondo M. J. T., Alves P. A. and Cruz P. E. (2008). "From retroviral vector production to gene transfer: spontaneous inactivation is caused by toss of reverse transcription capacity." Journal of Gene Medicine 10(4): 383-391. DOI

25. Carrondo M. J. T., Merten O. W., Haury M., Alves P. M. and Coroadinha A. S. (2008). "Impact of retroviral vector components stoichiometry on packaging cell lines: Effects on productivity and vector quality." Human Gene Therapy 19(2): 199-210. DOI

26. Carvalho S., Delgado R., Drew M. G. B., Calisto V. and Felix V. (2008). "Binding studies of a protonated dioxatetraazamacrocycle with carboxylate substrates." Tetrahedron 64(22): 5392-5403. DOI

27. Clemente J. J., Monteiro S. M. S., Carrondo M. J. T. and Cunha A. E. (2008). "Predicting sporulation events in a bioreactor using an electronic nose." Biotechnology and Bioengineering 101(3): 545-552. DOI

28. Correia A. R., Pastore C., Adinolfi S., Pastore A. and Gomes C. M. (2008). "Dynamics, stability and iron-binding activity of frataxin clinical mutants." Febs Journal 275(14): 3680-3690. DOI

29. Corsetti A., Settanni L., Braga T. M., Lopes M. D. S. and Suzzi G. (2008). "An investigation of the bacteriocinogenic potential of lactic acid bacteria associated with wheat (Triticum durum) kernels and non-conventional flours." Lwt-Food Science and Technology 41(7): 1173-1182. DOI

30. Costa A. P. d., Viciano M., Sanau M., Merino S., Tejeda J., Peris E. and Royo B. (2008). "First Cp*-functionalized N-heterocyclic carbene and its coordination to iridium. study of the catalytic properties." Organometallics 27(6): 1305-1309. DOI

31. Costa G. d., Lamy E., Silva F. C. E., Andersen J., Baptista E. S. and Coelho A. V. (2008). "Salivary amylase induction by tannin-enriched diets as a possible countermeasure against tannins." Journal of Chemical Ecology 34(3): 376-387. DOI

32. Crowley P. B., Matias P. M., Mi H. L., Firbank S. J., Banfield M. J. and Dennison C. (2008). "Regulation of protein function: Crystal packing interfaces and conformational dimerization." Biochemistry 47(25): 6583-6589. DOI

33. da Costa A. P., Reis P. M., Gamelas C., Romao C. C. and Royo B. (2008). "Dioxo-molybdenum(VI) and -tungsten(VI) BINOL and alkoxide complexes: Synthesis and catalysis in sulfoxidation, olefin epoxidation and hydrosilylation of carbonyl groups." Inorganica Chimica Acta 361(7): 1915-1921. DOI

34. de Sanctis D., Bento I., Inacio J. M., Custodio S., de Sa-Nogueira I. and Carrondo M. A. (2008). "Overproduction, crystallization and preliminary X-ray characterization of Abn2, an endo-1,5-alpha-arabinanase from Bacillus subtilis." Acta Crystallographica Section F-Structural Biology and Crystallization Communications 64: 636-638. DOI

35. de Sanctis D., Rego A. T., Marcal D., McVey C. E., Carrondo M. A. and Enguita F. J. (2008). "Overexpression, purification and crystallization of the tetrameric form of SorC sorbitol operon regulator." Acta Crystallographica Section F-Structural Biology and Crystallization Communications 64: 22-24. DOI

36. Di Paolo R. E., Gigante B., Esteves M. A., Pires N., Santos C., Lameiro M. H., de Melo J. S., Burrows H. D. and Macanita A. L. (2008). "Picosecond Structural Relaxation of Abietic Acid Based Amine End Capped Para-Phenylenevinylene Trimers in Solution." Chemphyschem 9(15): 2214-2220. DOI

37. Durao P., Chen Z., Fernandes A. T., Hildebrandt P., Murgida D. H., Todorovic S., Pereira M. M., Melo E. P. and Martins L. O. (2008). "Copper incorporation into recombinant CotA laccase from Bacillus subtilis: characterization of fully copper loaded enzymes." Journal of Biological Inorganic Chemistry 13(2): 183-193. DOI

38. Durao P., Chen Z. J., Silva C. S., Soares C. M., Pereira M. M., Todorovic S., Hildebrandt P., Bento I., Lindley P. F. and Martins L. O. (2008). "Proximal mutations at the type 1 copper site of CotA laccase: spectroscopic, redox, kinetic and structural characterization of I494A and L386A mutants." Biochemical Journal 412: 339-346. DOI

39. Eberini I., Rocco A. G., Ientile A. R., Baptista A. M., Gianazza E., Tomaselli S., Molinari H. and Ragona L. (2008). "Conformational and dynamics changes induced by bile acids binding to chicken liver bile acid binding protein." Proteins-Structure Function and Bioinformatics 71(4): 1889-1898. DOI

40. Escrevente C., Morais V. A., Keller S., Soares C. M., Altevogt P. and Costa J. (2008). "Functional role of N-glycosylation from ADAM10 in processing, localization and activity of the enzyme." Biochimica Et Biophysica Acta-General Subjects 1780(6): 905-913. DOI

41. Esperanca J., Guedes H. J. R., Lopes J. N. C. and Rebelo L. P. N. (2008). "Pressure-density-temperature(p-rho-T) surface of [C(6)mim][NTf2]." Journal of Chemical and Engineering Data 53(3): 867-870. DOI

42. Faria N. A., Carrico J. A., Oliveira D. C., Ramirez M. and de Lencastre H. (2008). "Analysis of typing methods for epidemiological surveillance of both methicillin-resistant and methicillin-susceptible Staphylococcus aureus strains." Journal of Clinical Microbiology 46(1): 136-144. DOI

43. Fernandes L., Rocheta M., Cordeiro J., Pereira S., Gerber S., Oliveira M. M. and Ribeiro M. M. (2008). "Genetic variation, mating patterns and gene flow in a Pinus pinaster Aiton clonal seed orchard." Annals of Forest Science 65(7): 10. DOI

44. Ferreira R., Blesic M., Trindade J., Marrucho I., Lopes J. N. C. and Rebelo L. P. N. (2008). "Solubility of fluorinated compounds in a range of ionic liquids. Cloud-point temperature dependence on composition and pressure." Green Chemistry 10(9): 918-928. DOI

45. Ferreira R., Pedrosa N., Marrucho I. M. and Rebelo L. P. N. (2008). "Biodegradable polymer-phase behavior: Liquid-liquid equilibrium of ethyl lactate and poly(lactic acid)." Journal of Chemical and Engineering Data 53(2): 588-590. DOI

46. Fonseca C., Neves A. R., Antunes A. M. M., Noronha J. P., Hahn-Hagerdal B., Santos H. and Spencer-Martins I. (2008). "Use of in vivo C-13 nuclear magnetic resonance Spectroscopy to elucidate L-arabinose metabolism in Yeasts." Applied and Environmental Microbiology 74(6): 1845-1855. DOI

47. Frazao C., Aragao D., Coelho R., Leal S. S., Gomes C. M., Teixeira M. and Carrondo M. A. (2008). "Crystallographic analysis of the intact metal centres [3Fe-4S](1+/0) and [4Fe-4S](2+/1+) in a Zn2+-containing ferredoxin." Febs Letters 582(5): 763-767. DOI

48. Freixo M. D., Karmali A., Frazao C. and Arteiro J. M. (2008). "Production of laccase and xylanase from Coriolus versicolor grown on tomato pomace and their chromatographic behaviour on immobilized metal chelates." Process Biochemistry 43(11): 1265-1274. DOI

49. Gamelas C. A., Lourenco T., da Costa A. P., Simplicio A. L., Royo B. and Romao C. C. (2008). "Selective and mild oxidation of sulfides to sulfoxides or sulfones using H2O2 and Cp ' Mo(CO)(3)Cl as catalysts." Tetrahedron Letters 49(32): 4708-4712. DOI

50. Gardete S., Aires-De-Sousa M., Faustino A., Ludovice A. M. and de Lencastre H. (2008). "Identification of the first vancomycin intermediate-resistant Staphylococcus aureus (VISA) isolate from a hospital in Portugal." Microbial Drug Resistance-Mechanisms Epidemiology and Disease 14(1): 1-6. DOI

51. Gomes C., Palma A. S., Almeida R., Regalla M., McCluskey L. F., Trojanowski J. Q. and Costa J. (2008). "Establishment of a cell model of ALS disease: Golgi apparatus disruption occurs independently from apoptosis." Biotechnology Letters 30(4): 603-610. DOI

52. Gomes R. A., Miranda H. V., Silva M. S., Graca G., Coelho A. V., Ferreira A. E. D., Cordeiro C. and Freire A. P. (2008). "Protein glycation and methylglyoxal metabolism in yeast: finding peptide needles in protein haystacks." Fems Yeast Research 8(1): 174-181. DOI

53. Goncalves A. M. D., Rego A. T., Thomaz M., Enguita F. J. and Carrondo M. A. (2008). "Expression, purification, crystallization and preliminary X-ray characterization of two crystal forms of stationary-phase survival E protein from Campylobacter jejuni." Acta Crystallographica Section F-Structural Biology and Crystallization Communications 64: 213-216. DOI

54. Goncalves L. G., Lamosa P., Huber R. and Santos H. (2008). "Di-myo-inositol phosphate and novel UDP-sugars accumulate in the extreme hyperthermophile Pyrolobus fumarii." Extremophiles 12(3): 383-389. DOI

55. Gorynia S., Matias P. M., Bandeiras T. M., Donner P. and Carrondo M. A. (2008). "Cloning, expression, purification, crystallization and preliminary X-ray analysis of the human RuvBL1-RuvBL2 complex." Acta Crystallographica Section F-Structural Biology and Crystallization Communications 64: 840-846. DOI

56. Gouveia R. M., Gomes C. M., Sousa M., Alves P. M. and Costa J. (2008). "Kinetic analysis of L1 homophilic interaction - Role of the first four immunoglobulin domains and implications on binding mechanism." Journal of Biological Chemistry 283(42): 28038-28047. DOI

57. Guerra K. P. and Delgado R. (2008). "Homo-and heterodinuclear complexes of the tris(catecholamide) derivative of a tetraazamacrocycle with Fe3+, Cu2+ and Zn2+ metal ions." Dalton Transactions(4): 539-550. DOI

58. Guerra K. P. and Delgado R. (2008). "Iron(III) complexes of the tris-(3-aminopropyl) derivative of a 14-membered tetraazamacrocycle: Potentiometric, spectroscopic and electrochemical studies." Polyhedron 27(11): 2265-2270. DOI

59. Guzzon A., Bohn A., Diociaiuti M. and Albertano P. (2008). "Cultured phototrophic biofilms for phosphorus removal in wastewater treatment." Water Research 42(16): 4357-4367. DOI

60. Inacio J. M., Correia I. L. and de Sa-Nogueiral I. (2008). "Two distinct arabinofuranosidases contribute to arabino-oligosaccharide degradation in Bacillus subtilis." Microbiology-Sgm 154: 2719-2729. DOI

61. Inacio J. M. and de Sa-Nogueira I. (2008). "Characterization of abn2 (yxiA), encoding a bacillus subtilis GH43 arabinanase, Abn2, an its role in arabino-polysaccharide degradation." Journal of Bacteriology 190(12): 4272-4280. DOI

62. Isticato R., Pelosi A., Zilhao R., Baccigalupi L., Henriques A. O., De Felice M. and Ricca E. (2008). "CotC-CotU heterodimerization during assembly of the Bacillus subtilis spore coat." Journal of Bacteriology 190(4): 1267-1275. DOI

63. Istrate C., Hinkula J., Charpilienne A., Poncet D., Cohen J., Svensson L. and Johansen K. (2008). "Parenteral administration of RF 8-2/6/7 rotavirus-like particles in a one-dose regimen induce protective immunity in mice." Vaccine 26(35): 4594-4601. DOI

64. Istrate C., Hinkula J., Hammarstrom L. and Svensson L. (2008). "Individuals with selective IgA deficiency resolve rotavirus disease and develop higher antibody titers (IgG, IgG1) than IgA competent individuals." Journal of Medical Virology 80(3): 531-535.

65. Jorge C. D., Fonseca L. L., Boos W. and Santos H. (2008). "Role of periplasmic trehalase in uptake of trehalose by the thermophilic bacterium Rhodothermus marinus." Journal of Bacteriology 190(6): 1871-1878. DOI

66. Kodad O., Alonso J. M., Sanchez A. and Oliveira M. M. (2008). "Evaluation of genetic diversity of S-alleles in an almond germplasm collection." Journal of Horticultural Science & Biotechnology 83(5): 603-608.

67. Kodad O., Sanchez A., Saibo N., Oliveira M. and Company R. S. I. (2008). "Identification and characterization of new S-alleles associated with self-incompatibility in almond." Plant Breeding 127(6): 632-638. DOI

68. Lamy E., da Costa G., Silva F. C. E., Potes J., Coelho A. V. and Baptista E. S. (2008). "Comparison of electrophoretic protein profiles from sheep and goat parotid saliva." Journal of Chemical Ecology 34(3): 388-397. DOI

69. Leal S. S. and Gomes C. M. (2008). "On the relative contribution of ionic interactions over iron-sulfur clusters to ferredoxin stability." Biochimica Et Biophysica Acta-Proteins and Proteomics 1784(11): 1596-1600. DOI

70. Leandro P. and Gomes C. M. (2008). "Protein misfolding in conformational disorders: Rescue of folding defects and chemical chaperoning." Mini-Reviews in Medicinal Chemistry 8(9): 901-911.

71. Lobo S. A. L., Brindley A. A., Romao C. V., Leech H. K., Warren M. J. and Saraiva L. M. (2008). "Two distinct roles for two functional cobaltochelatases (CbiK) in Desulfovibrio vulgaris Hildenborough." Biochemistry 47(21): 5851-5857. DOI

72. Lopes A., Edwards K. and Feitosa E. (2008). "Extruded vesicles of dioctadecyldimethylammonium bromide and chloride investigated by light scattering and cryogenic transmission electron microscopy." Journal of Colloid and Interface Science 322(2): 582-588. DOI

73. Lopes J. N. C., Padua A. A. H. and Shimizu K. (2008). "Molecular force field for ionic liquids IV: Trialkylimidazolium and alkoxycarbonyl-imidazolium cations; alkylsulfonate and alkylsulfate anions." Journal of Physical Chemistry B 112(16): 5039-5046. DOI

74. Lopes J. N. C., Shimizu K., Padua A. A. H., Umebayashi Y., Fukuda S., Fujii K. and Ishiguro S. I. (2008). "Potential energy landscape of bis(fluorosulfonyl)amide." Journal of Physical Chemistry B 112(31): 9449-9455. DOI

75. Lou J. D., Li L., Vatanian N., Lu X. L. and Yu X. P. (2008). "Jones reagent supported on aluminum silicate: A new reagent for oxidation of alcohols." Synthesis and Reactivity in Inorganic Metal-Organic and Nano-Metal Chemistry 38(4): 370-372. DOI

76. Lou J. D., Li L., Vatanian N., Lu X. L. and Yu X. P. (2008). "Selective oxidation of alpha-hydroxy ketones to alpha-diketones with chromium trioxide supported on kieselghur reagent." Synthesis and Reactivity in Inorganic Metal-Organic and Nano-Metal Chemistry 38(4): 373-375. DOI

77. Lubal P., Albrecht-Gary A. M., Blanc S., Costa J. and Delgado R. (2008). "Kinetic study of dissociation of a copper(II) complex of a 14-membered tetraaza-macrocyclic ligand containing pyridine and pendant N-carboxymethyl arms." Collection of Czechoslovak Chemical Communications 73(2): 258-274. DOI

78. Machuqueiro M. and Baptista A. M. (2008). "Acidic range titration of HEWL using a constant-pH molecular dynamics method." Proteins-Structure Function and Bioinformatics 72(1): 289-298. DOI

79. Marques A. P., Leitao M. C. and Romao M. V. S. (2008). "Biogenic amines in wines: Influence of oenological factors." Food Chemistry 107(2): 853-860.

80. Mellado M. C. M., Franco C., Coelho A., Alves P. M. and Simplicio A. L. (2008). "Sodium dodecyl sulfate-capillary gel electrophoresis analysis of rotavirus-like particles." Journal of Chromatography A 1192(1): 166-172. DOI

81. Mellado M. C. M., Peixoto C., Cruz P. E., Carrondo M. J. T. and Alves P. M. (2008). "Purification of recombinant rotavirus VP7 glycoprotein for the study of in vitro rotavirus-like particles assembly." Journal of Chromatography B-Analytical Technologies in the Biomedical and Life Sciences 874(1-2): 89-94. DOI

82. Memmi G., Filipe S. R., Pinho M. G., Fu Z. B. and Cheung A. (2008). "Staphylococcus aureus PBP4 Is Essential for beta-Lactam Resistance in Community-Acquired Methicillin-Resistant Strains." Antimicrobial Agents and Chemotherapy 52(11): 3955-3966. DOI

83. Menezes R. A., Amaral C., Batista-Nascimento L., Santos C., Ferreira R. B., Devaux F., Eleutherio E. C. A. and Rodrigues-Pousada C. (2008). "Contribution of Yap1 towards Saccharomyces cerevisiae adaptation to arsenic-mediated oxidative stress." Biochemical Journal 414: 301-311. DOI

84. Micaelo N. M. and Soares C. M. (2008). "Protein structure and dynamics in ionic liquids. Insights from molecular dynamics simulation studies." Journal of Physical Chemistry B 112(9): 2566-2572. DOI

85. Micaelo N. M., Victor B. L. and Soares C. M. (2008). "Protein thermal stabilization by charged compatible solutes: Computational studies in rubredoxin from Desulfovibrio gigas." Proteins-Structure Function and Bioinformatics 72(2): 580-588. DOI

86. Miguel C., Simoes M., Oliveira M. M. and Rocheta M. (2008). "Envelope-Like Retrotransposons in the Plant Kingdom: Evidence of Their Presence in Gymnosperms (Pinus pinaster)." Journal of Molecular Evolution 67(5): 517-525. DOI

87. Miragaia M., Carrico J. A., Thomas J. C., Couto I., Enright M. C. and de Lencastre H. (2008). "Comparison of molecular typing methods for characterization of Staphylococcus epidermidis: Proposal for clone definition." Journal of Clinical Microbiology46(1): 118-129. DOI

88. Morais V. A., Leight S., Pijak D. S., Lee V. M. Y. and Costa J. (2008). "Cellular localization of Nicastrin affects amyloid beta species production." Febs Letters 582(3): 427-433. DOI

89. Mota S., Mendes M., Penque D., Coelho A. V. and Cunha C. (2008). "Changes in the proteome of Huh7 cells induced by transient expression of hepatitis D virus RNA and antigens." Journal of Proteomics 71(1): 71-79. DOI

90. Najmudin S., Gonzalez P. J., Trincao J., Coelho C., Mukhopadhyay A., Cerqueira N., Romao C. C., Moura I., Moura J. J. G., Brondino C. D. and Romao M. J. (2008). "Periplasmic nitrate reductase revisited: a sulfur atom completes the sixth coordination of the catalytic molybdenum." Journal of Biological Inorganic Chemistry 13(5): 737-753. DOI

91. Nascimento E., Nogueira N., Silva T., Braschler T., Demierre N., Renaud P. and Oliva A. G. (2008). "Dielectrophoretic sorting on a microfabricated flow cytometer: label free separation ofBabesia bovisinfected erythrocytes." Bioelectrochemistry.

92. Negrao S., Oliveira M. M., Jena K. K. and Mackill D. (2008). "Integration of genomic tools to assist breeding in the japonica subspecies of rice." Molecular Breeding 22(2): 159-168. DOI

93. Nobre L. S., Goncalves V. L. and Saraiva L. M. (2008) "Flavohemoglobin of Staphylococcus aureus." in Globins and Other Nitric Oxide-Reactive Proteins, Pt A Methods in Enzymology 436: 203-216. DOI

94. Nunes C., Araujo S. D., da Silva J. M., Fevereiro M. P. S. and da Silva A. B. (2008). "Physiological responses of the legume model Medicago truncatula cv. Jemalong to water deficit." Environmental and Experimental Botany 63(1-3): 289-296. DOI

95. Nunes S., Sa-Leao R. and de Lencastre H. (2008). "Optochin resistance among Streptococcus pneumoniae strains colonizing healthy children in Portugal." Journal of Clinical Microbiology 46(1): 321-324. DOI

96. Nunes S., Sa-Leao R., Pereira L. C. and de Lencastre H. (2008). "Emergence of a serotype 1 Streptococcus pneumoniae lineage colonising healthy children in Portugal in the seven-valent conjugate vaccination era." Clinical Microbiology and Infection14(1): 82-84. DOI

97. Oliveira D. C., Santos M., Milheirico C., Carrico J. A., Vinga S., Oliveira A. L. and de Lencastre H. (2008). "ccrB typing tool: an online resource for staphylococci ccrB sequence typing." Journal of Antimicrobial Chemotherapy 61(4): 959-960. DOI

98. Oliveira T. F., Vonrhein C., Matias P. M., Venceslau S. S., Pereira I. A. C. and Archer M. (2008). "Purification, crystallization and preliminary crystallographic analysis of a dissimilatory DsrAB sulfite reductase in complex with DsrC." Journal of Structural Biology 164(2): 236-239. DOI

99. Overton T. W., Justino M. C., Li Y., Baptista J. M., Melo A. M. P., Cole J. A. and Saraiva L. M. (2008). "Widespread distribution in pathogenic bacteria of di-iron proteins that repair oxidative and nitrosative damage to iron-sulfur centers." Journal of Bacteriology 190(6): 2004-2013. DOI

100. Padua J. N. C., Shimnizu K., Padua A. A. H., Umebayashi Y., Fukuda S., Fujii K. and Ishiguro S. I. (2008). "A tale of two ions: The conformational landscapes of bis(trifluoromethanesulfonyl)amide and N,N-dialkylpyrrolidinium." Journal of Physical Chemistry B 112(5): 1465-1472. DOI

101. Paiva J. A. P., Garces M., Alves A., Garnier-Gere P., Rodrigues J. C., Lalanne C., Porcon S., Le Provost G., Perez D. D., Brach J., Frigerio J. M., Claverol S., Barre A., Fevereiro P. and Plomion C. (2008). "Molecular and phenotypic profiling from the base to the crown in maritime pine wood-forming tissue." New Phytologist 178(2): 283-301. DOI

102. Paiva J. A. P., Garnier-Gere P. H., Rodrigues J. C., Alves A., Santos S., Graca J., Le Provost G., Chaumeil P., Da Silva-Perez D., Bosc A., Fevereiro P. and Plomion C. (2008). "Plasticity of maritime pine (Pinus pinaster) wood-forming tissues during a growing season." New Phytologist 179(4): 1080-1094. DOI

103. Paixao V. B., Salgueiro C. A., Brennan L., Reid G. A., Chapman S. K. and Turner D. L. (2008). "The Solution Structure of a Tetraheme Cytochrome from Shewanella frigidimarina Reveals a Novel Family Structural Motif." Biochemistry 47(46): 11973-11980. DOI

104. Palma A. S., De Carvalho M., Grammel N., Pinto S., Barata N., Conradt H. S. and Costa J. (2008). "Proteomic analysis of plasma from Portuguese patients with familial amyotrophic lateral sclerosis." Amyotrophic Lateral Sclerosis 9(6): 339 - 349 DOI

105. Patto M. C. V., Diaz-Ruiz R., Satovic Z., Roman B., Pujadas-Salva A. J. and Rubiales D. (2008). "Genetic diversity of Moroccan populations of Orobanche foetida: evolving from parasitising wild hosts to crop plants." Weed Research 48(2): 179-186. DOI

106. Patto M. C. V., Moreira P. M., Almeida N., Satovic Z. and Pego S. (2008). "Genetic diversity evolution through participatory maize breeding in Portugal." Euphytica 161(1-2): 283-291. DOI

107. Pereira M. M., Sousa F. L., Verissimo A. F. and Teixeira M. (2008). "Looking for the minimum common denominator in haem-copper oxygen reductases: Towards a unified catalytic mechanism." Biochimica Et Biophysica Acta-Bioenergetics 1777(7-8): 929-934. DOI

108. Pereira P. M., He Q., Valente F. M. A., Xavier A. V., Zhou J. Z., Pereira I. A. C. and Louro R. O. (2008). "Energy metabolism in Desulfovibrio vulgaris Hildenborough: insights from transcriptome analysis." Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology 93(4): 347-362. DOI

109. Pereira P. M., He Q., Xavier A. V., Zhou J. Z., Periera I. A. C. and Louro R. O. (2008). "Transcriptional response of Desulfovibrio vulgaris Hildenborough to oxidative stress mimicking environmental conditions." Archives of Microbiology 189(5): 451-461. DOI

110. Petoukhov M. V., Vicente J. B., Crowley P. B., Carrondo M. A., Teixeira M. and Svergun D. I. (2008). "Quaternary structure of flavorubredoxin as revealed by synchrotron radiation small-angle X-ray scattering." Structure 16(9): 1428-1436. DOI

111. Petrovski Z., Romao C. C. and Afonso C. A. M. (2008). "Synthesis of Tris(N,N-dimethylthiocarbamoyl)-1,1,1-tris-(methylaminomethyl)ethane and its application as ligand for Pauson-Khand reaction." Synthetic Communications 38(16): 2761-2767. DOI

112. Pinheiro C., de Carvalho M. H. C., Bartels D., Ricardo A. P. and Chaves M. M. (2008). "Dehydrins in Lupinus albus: pattern of protein accumulation in response to drought." Functional Plant Biology 35(1): 85-91. http://dx.doi.org/10.1071/FP07179

113. Pison L., Lopes J. N. C., Rebelo L. P. N., Padua A. A. H. and Gomes M. F. C. (2008). "Interactions of fluorinated gases with ionic liquids: Solubility of CF4, C2F6, and C3F8 in trihexyltetradecylphosphonium bis(trifluoromethylsulfonyl)amide." Journal of Physical Chemistry B 112(39): 12394-12400. DOI

114. Placido D., Fernandes C. G., Isidro A., Carrondo M. A., Henriques A. O. and Archer M. (2008). "Auto-induction and purification of a Bacillus subtilis transglutaminase (Tgl) and its preliminary crystallographic characterization." Protein Expression and Purification 59(1): 1-8. DOI

115. Plechkova N. V. and Seddon K. R. (2008). "Applications of ionic liquids in the chemical industry." Chemical Society Reviews 37(1): 123-150. DOI

116. Pokkuluri P. R., Pessanha M., Londer Y. Y., Wood S. J., Duke N. E. C., Wilton R., Catarino T., Saigueiro C. A. and Schiffer M. (2008). "Structures and solution properties of two novel periplasmic sensor domains with c-type heme from chemotaxis proteins of Geobacter sulfurreducens: Implications for signal transduction." Journal of Molecular Biology 377(5): 1498-1517. DOI

117. Raquel H., Lourenco T., Moita C. and Oliveira M. M. (2008). "Expression of prune dwarf Ilarvirus coat protein sequences in Nicotiana benthamiana plants interferes with PDV systemic proliferation." Plant Biotechnology Reports 2(1): 75-85. DOI

118. Real G., Fay A., Eldar A., Pinto S. M., Henriques A. O. and Dworkin J. (2008). "Determinants for the subcellular localization and function of a nonessential SEDS protein." Journal of Bacteriology 190(1): 363-376. DOI

119. Reis P. M., Costa P. J., Romao C. C., Fernandes J. A., Calhorda M. J. and Royo B. (2008). "Hydrogen activation by high-valent oxo-molybdenum(VI) and -rhenium(VII) and -(V) compounds." Dalton Transactions(13): 1727-1733. DOI

120. Rocco A. G., Mollica L., Ricchiuto P., Baptista A. M., Gianazza E. and Eberini I. (2008). "Characterization of the protein unfolding processes induced by urea and temperature." Biophysical Journal 94(6): 2241-2251. DOI

121. Rodrigues J. V., Victor B. L., Huber H., Saraiva L. M., Soares C. M., Cabelli D. E. and Teixeira M. (2008). "Superoxide reduction by Nanoarchaeum equitans neelaredoxin, an enzyme lacking the highly conserved glutamate iron ligand." Journal of Biological Inorganic Chemistry 13(2): 219-228. DOI

122. Rodrigues M. L., Santos T. P., Rodrigues A. P., de Souza C. R., Lopes C. M., Maroco J. P., Pereira J. S. and Chaves M. M. (2008). "Hydraulic and chemical signalling in the regulation of stomatal conductance and plant water use in field grapevines growing under deficit irrigation." Functional Plant Biology 35(7): 565-579. DOI

123. Rodrigues M. L., Scott K. A., Sansom M. S. P., Pereira I. A. C. and Archer M. (2008). "Quinol oxidation by c-type cytochromes: Structural characterization of the menaquinol binding site of NrfHA." Journal of Molecular Biology 381(2): 341-350. DOI

124. Roldao A., Carrondo M. J. T., Alves P. M. and Oliveira R. (2008). "Stochastic simulation of protein expression in the baculovirus/insect cells system." Computers & Chemical Engineering 32(1-2): 68-77. DOI

125. Ruivo R., Couto R. and Simoes P. C. (2008). "Supercritical carbon dioxide fractionation of the model mixture squalene/oleic acid in a membrane contactor." Separation and Purification Technology 59(3): 231-237. DOI

126. Ruiz-Rodriguez A., Bronze M. R. and da Ponte M. N. (2008). "Supercritical fluid extraction of tobacco leaves: A preliminary study on the extraction of solanesol." Journal of Supercritical Fluids 45(2): 171-176. DOI

127. Sa-Leao R., Nunes S., Brito-Avo A., Alves C. R., Carrico J. A., Saldanha J., Almeida J. S., Santos-Sanches I. and de Lencastre H. (2008). "High rates of transmission of and colonization by Streptococcus pneumoniae and Haemophilus influenzae within a day care center revealed in a longitudinal study." Journal of Clinical Microbiology 46(1): 225-234. DOI

128. Sanchez C., Neves A. R., Cavalheiro J., dos Santos M. M., Garcia-Quintans N., Lopez P. and Santos H. (2008). "Contribution of citrate metabolism to the growth of Lactococcus lactis CRL264 at low pH." Applied and Environmental Microbiology 74(4): 1136-1144. DOI

129. Santos R. and Flammang P. (2008). "Estimation of the attachment strength of the shingle sea urchin, Colobocentrotus atratus, and comparison with three sympatric echinoids." Marine Biology 154(1): 37-49. DOI

130. Serra A. T., Matias A. A., Nunes A. V. M., Leitao M. C., Brito D., Bronze R., Silva S., Pires A., Crespo M. T., Romao M. V. S. and Duarte C. M. (2008). "In vitro evaluation of olive- and grape-based natural extracts as potential preservatives for food." Innovative Food Science & Emerging Technologies 9(3): 311-319. DOI

131. Serra H., Mendes T., Bronze M. R. and Simplicio A. L. (2008). "Prediction of intestinal absorption and metabolism of pharmacologically active flavones and flavanones." Bioorganic & Medicinal Chemistry 16(7): 4009-4018. DOI

132. Serrano M., Vieira F., Moran C. P. and Henriques A. O. (2008). "Processing of a Membrane Protein Required for Cell-to-Cell Signaling during Endospore Formation in Bacillus subtilis." Journal of Bacteriology 190(23): 7786-7796. DOI

133. Shvaleva A., Silva F. C. E., Scotti P., Ufir M. O., Hausman J. F., Cedric G., Ramos P., Almeida M. H., Rodrigues M. L., Pereira J. S. and Chaves M. M. (2008). "Physiological and biochemical responses to low non-freezing temperature of two Eucalyptus globulus clones differing in drought resistance." Annals of Forest Science 65(2): 10. DOI

134. Silva A. C., Delgado I., Sousa M. F. Q., Carrondo M. J. T. and Alves P. M. (2008). "Scalable culture systems using different cell lines for the production of Peste des Petits ruminants vaccine." Vaccine 26(26): 3305-3311. DOI

135. Silva J. N., Silva A. M. G., Tome J. P., Ribeiro A. O., Domingues M. R. M., Cavaleiro J. A. S., Silva A. M. S., Graca M., Neves M., Tome A. C., Serra O. A., Bosca F., Filipe P., Santuse R. and Morliere P. (2008). "Photophysical properties of a photocytotoxic fluorinated chlorin conjugated to four beta-cyclodextrins." Photochemical & Photobiological Sciences 7(7): 834-843. DOI

136. Silva S. M. d., Venceslau S. S., Fernandes C. L. V., Valente F. M. A. and Pereira I. A. C. (2008). "Hydrogen as an energy source for the human pathogen Bilophila wadsworthia." Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology 93(4): 381-390. DOI

137. Sousa F. L., Verissimo A. F., Baptista A. M., Soulimane T., Teixeira M. and Pereira M. M. (2008). "Redox properties of Thermus thermophilus ba3: Different electron-proton coupling in oxygen reductases?" Biophysical Journal 94(6): 2434-2441. DOI

138. Stelter M., Melo A. M. P., Pereira M. M., Gomes C. M., Hreggvidsson G. O., Hjorleifsdottir S., Saraiva L. M., Teixeira M. and Archer M. (2008). "A Novel Type of Monoheme Cytochrome c: Biochemical and Structural Characterization at 1.23 angstrom Resolution of Rhodothermus marinus Cytochrome c." Biochemistry 47(46): 11953-11963. DOI

139. Teixeira A. P., Santos S. S., Carinhas N., Oliveira R. and Alves P. M. (2008). "Combining metabolic flux analysis tools and C-13 NMR to estimate intracellular fluxes of cultured astrocytes." Neurochemistry International 52(3): 478-486. DOI

140. Teixeira V. H., Soares C. M. and Baptista A. M. (2008). "Proton pathways in a [NiFe]-hydrogenase: A theoretical study." Proteins-Structure Function and Bioinformatics 70(3): 1010-1022. DOI

141. Tereso S., Miguel C. M., Mascarenhas M., Roque A., Trindade H., Maroco J. and Oliveira M. M. (2008). "Improved in vitro rooting of Prunus dulcis Mill. cultivars." Biologia Plantarum 52(3): 437-444. DOI

142. Todorovic S., Justino M. C., Wellenreuther G., Hildebrandt P., Murgida D. H., Meyer-Klaucke W. and Saraiva L. M. (2008). "Iron-sulfur repair YtfE protein from Escherichia coli: structural characterization of the di-iron center." Journal of Biological Inorganic Chemistry 13(5): 765-770. DOI

143. Verissimo A. F., Sousa F. L., Baptista A. M., Teixeira M. and Pereira M. M. (2008). "Thermodynamic Redox Behavior of the Heme Centers in A-Type Heme-Copper Oxygen Reductases: Comparison between the Two Subfamilies." Biophysical Journal 95(9): 4448-4455. DOI

144. Vicente J. B., Carrondo M. A., Teixeira M. and Frazao C. (2008) "Structural studies on flavodiiron proteins." in Globins and Other Nitric Oxide-Reactive Proteins, Part B Methods in Enzymology 437: 3-19. DOI

145. Vicente J. B., Justino M. C., Goncalves V. L., Saraiva L. M. and Teixeira M. (2008) "Biochemical, spectroscopic, and thermodynamic properties of flavodiiron proteins." in Globins and Other Nitric Oxide-Reactive Proteins, Part B Methods in Enzymology 437: 21-45. DOI

146. Vicente J. B., Scandurra F. M., Forte E., Brunori M., Sarti P., Teixeira M. and Giuffre A. (2008) "Kinetic characterization of the Escherichia coli nitric oxide reductase flavorubredoxin." in Globins and Other Nitric Oxide-Reactive Proteins, Part B Methods in Enzymology 437: 47-62. DOI

147. Vicente T., Sousa M. F. Q., Peixoto C., Mota J. P. B., Alves P. M. and Carrondo M. J. T. (2008). "Anion-exchange membrane chromatography for purification of rotavirus-like particles." Journal of Membrane Science 311(1-2): 270-283. DOI

148. Vieira H. L. A., Queiroga C. S. F. and Alves P. M. (2008). "Pre-conditioning induced by carbon monoxide provides neuronal protection against apoptosis." Journal of Neurochemistry 107(2): 375-384. DOI

149. Vilela M., Chou I. C., Vinga S., Vasconcelos A. T. R., Voit E. O. and Almeida J. S. (2008). "Parameter optimization in S-system models." Bmc Systems Biology 2: 13. DOI

150. Wang L., Gilbert R. J. C., Atilano M. L., Filipe S. R., Gay N. J. and Ligoxygakis P. (2008). "Peptidoglycan recognition protein-SD provides versatility of receptor formation in Drosophila immunity." Proceedings of the National Academy of Sciences of the United States of America 105(33): 11881-11886. DOI

151. Xu Y., Zhang L., Xie H., Zhang Y. Q., Oliveira M. M. and Ma R. C. (2008). "Expression analysis and genetic mapping of three SEPALLATA-like genes from peach (Prunus persica (L.) Batsch)." Tree Genetics & Genomes 4(4): 693-703. DOI

152. Xu Y., Zhang L., Xie H., Zhang Y.-Q., Oliveira M. M. and Ma R.-C. (2008 in press). "Functional analysis and genetic mapping of three peach (Prunus persica Sieb et Zucc.) SEPALLATA-like genes." Theoretical and Applied Genetics.

153. Zapun A., Vernet T. and Pinho M. G. (2008). "The different shapes of cocci." Fems Microbiology Reviews 32(2): 345-360. DOI

Books

Rodrigues M. L., Pereira I. and Archer M. (2008) "Membrane-bound cytochrome c quinol dehydrogenase NrfH." in Handbook of Metalloproteins.

Vicente J. B., Carrondo M. A., Teixeira M. and Frazão C. (2008) "Flavodiiron proteins: nitric oxide and/or oxygen reductases." in Handbook of Metalloproteins

Weinberg H. S., Pereira V. J. and Ye Z. (2008) "Drugs in drinking water: treatment options." in Fate of pharmaceuticals in the environment and in water treatment systems. (D. S. Aga): 391.